Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07651 ATGTCTTCACTTGCAAAGCCCAATGACCCATTTGCCTTGCAAATGGTGTTCATTGATGAAGAGGGTGGGAGGATAGAGGCCACCGTGCCGAAGCACCTGATATTGAAATTCTCGCAGGCTGTGGCTGAGGGTGAGGTTTATAGGCTGTCGAATTTTGGTACGACAGCGAATTCTGGAAAGTTTCGGGCCGTAAACCACGAATATAAGCTCGTGTTCAATGGAGCCACGAAATTGGTTCCTTGTCCTTCTGTCACCATCCCGTTGTCTGGGTTATCTTTGCTGAAGACTTCAGACATTAACAAAACTAATGGTTCTTCTAATTTCCTCTTAGATTTCATGGGGGTTCTCACGACTGTTTCAGAGGAGCTGACCATGAACAAGCAAGGCAGAGAGACAAGGATGATGCTGCTTGATTTAGTTGATGAAATGGGATCCATAAGGTGTGCAATATTCGGAGATACAGTTGAGGTTGTAGCTGGGTTTCTCACCCTCCCAAGAGACGGGCTGCCGGTCATCATCATCCAGTTTGCGAAAGTCAATACATATAAGGGCCAAGTGGGCATTCAAAATGTAATGAACGCCACTAAGTTTTACTGGAATCCTACCTTACCAGAGGCAATTGAGTTTAAGAATGGCCTTGCTGGGCATGAAATAGAGACTGAAGTTGCTATTGGTTCCATTAGCGAGAGATCTCGACAAGTGTCCATGAAAGAAGAGTTCCTCTTTATTTATCCTAGAAAGTCTGTTGGAAAACTCAGCCTTACCAATGAGGATGGATGCTCCATTGTTCTAGGTGTGATTGATGAAGTGCTACAGGAGGATCATTGGTGGTACATGGCATGTACATGCATGAAAGCTTTATCATTTGATTACACATTACCTTACTGTCGGGATTGCAACAAAGTCCTGTTTGAAATTAACCCAAGGTTCAAGATCAAATTGCTGGTGACAAATGGAGATAATTGTGTTCAGTTCATCATGTGGGACTCAGAATGCTTCTCTTTACTGAACAAAACTTGTAGACAATTGTTATCTGAGATTAAGGGGGACCCAACTGAGTGCTACCCTTCTGAAATAATGGATCTAACTGGTCAGGAATTTCTATTTCGAGTAGAGAGAAAGAATGATCCAATGTTTGCCTTTGATGAATCTTATATTGTCAGGAGGGTGTGTACTGATCCAAGTGTTATTGAAGAGTTCAAAAGTGGAGTAGAGGAAGAGACTCTATCAAAGGTTTTGTTCTCACTTCATGTCCTTTATTAA 1263 0.4244 MSSLAKPNDPFALQMVFIDEEGGRIEATVPKHLILKFSQAVAEGEVYRLSNFGTTANSGKFRAVNHEYKLVFNGATKLVPCPSVTIPLSGLSLLKTSDINKTNGSSNFLLDFMGVLTTVSEELTMNKQGRETRMMLLDLVDEMGSIRCAIFGDTVEVVAGFLTLPRDGLPVIIIQFAKVNTYKGQVGIQNVMNATKFYWNPTLPEAIEFKNGLAGHEIETEVAIGSISERSRQVSMKEEFLFIYPRKSVGKLSLTNEDGCSIVLGVIDEVLQEDHWWYMACTCMKALSFDYTLPYCRDCNKVLFEINPRFKIKLLVTNGDNCVQFIMWDSECFSLLNKTCRQLLSEIKGDPTECYPSEIMDLTGQEFLFRVERKNDPMFAFDESYIVRRVCTDPSVIEEFKSGVEEETLSKVLFSLHVLY. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07651 420 SUPERFAMILY Nucleic acid-binding proteins 253 377 IPR012340 -
Seca4g07651 420 Gene3D - 5 83 IPR012340 -
Seca4g07651 420 SUPERFAMILY Nucleic acid-binding proteins 92 213 IPR012340 -
Seca4g07651 420 Pfam Domain of unknown function DUF223 15 84 IPR003871 -
Seca4g07651 420 Gene3D - 85 221 IPR012340 -
Seca4g07651 420 CDD RPA1_DBD_A_like 8 77 - -
Seca4g07651 420 Gene3D - 228 392 IPR012340 -
Seca4g07651 420 SUPERFAMILY Nucleic acid-binding proteins 9 84 IPR012340 -
Seca4g07651 420 CDD RPA1_DBD_B_like 111 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07651 Seca-Chr4 174492610 174495974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07651 17 210 Core DNA Replication Machinery Family AT2G06510 27.363 4.65e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07651 - - lja:Lj6g3v0884310.1 335.109