Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07640 ATGAAAAGGACATCTGATACAACACGTTTACCTGTGGCTAGGAGAGGTATTGGATCCAAAGGAGACCCAATAGCACTCTTAACTAACCATTTTAGAGTTGCTGTGAGCAAGAATGATGGCTGCTTCTATCATTACAATGTTGCTATGTGGTATGAAGATGGCCACCCAGTTGAAGGGAAGGGTGTTGGGAGAAAGGTCATTGATAAAGTTTGTGAAACATATGATGATGTCTTGAAAAGCAAGAATTTTGCATATGATGGTGAGAAAAGCTTATTCACTGTTGGTTCTCTGCCAAGTAATAAGCATGAATTAACTGTTGTGTTAAGTGGAGTTTCATCAAAGAGTGCTGATAGCCCAACTGCAGGAGACTCAAAGAGAATGAGGCGTCAATCTCAATCTAAAAGTGTGAAGGTAGAGATCAGTTATGCAGCCAAAATCCCATTGCAAGCAATTGCAGATGCATTACGTGGTCAGGATTCTATGCACTCCCAAGAAGCACTGAGGGTTCTGGACATTGTCCTGAGGCAGCATGCAGCAGAACAGGGATGTCTCCTAGTTCGCCAATCCTTCTTTCATGATAATCCAACGAATTACACTGATATAGGAGGTGGTGTAGGAGGTGTTAGTGGTTTCTATTCAAGCTTCCGAGCCACACAAAAGGGTTTATCTCTGAATGTTGATGTGTCAACCACATTGCTTGTAAGGCCTGGTCCTGTAGTGGACTTCCTTGTCCTGAATCAGGAGGTTCAACACCCAAACTTTATTGATTGGGCCAAGGCAAAACGAATGCTGAAAAACCTCAGAATCAAGGCTAATAATATTGAGTTCAAAATCACTGGACTGAGTGAGAAACCCTGTCGGTCACAGACATTTTTATTAAGACATGGAAAGGATGAAAATGGTGAAGTTCAGTCAAGTGAAATCACAGTTTATGACTACTTCAAACACCACAAAAAGATTGAACTGCGCTATTCTGCTGATTTGCCATGCATCAATGTTGGCAGATCAAAGAGGCCAATTTATTTTCCTGTGGAGCTATGCAATTTGGTCTCATTGCAGCGGTACACCAAGGCACTAACAAATTTGCAAAGGTCACAACTGGTGCAGAAATCAAGGCAAAATCCCCGTGAAAAGCAAGTAGCTTTGCAAGATTCCTTAAGAAACAGCAAATATGATGATGAGCCTATGCTTCGCTCTTTTGGGATTACGATTGACCCTAACTTTACCCCAGTTAATGGTCGTACTCTGAAACCCCCAAATCTACTCTTTGGAGGCGATGAGAATTTCGCTCCCACTAAAGGGCGCTGGAATTTCAACAAAAAGCGAATAGTTGATCCTGTGATTATTGAGCACTGGGCCATTGTAAACTTCTCGGCTCGATGTAATATAGATCACCTGTGCAATACCCTTAGGACTTGTTCTCAAATGAAAGGGGTCATAAAAAGACCTCCACTCTCGGTATTTCATGAAGAAAGTCGCTTCAGGCGTGAGCCAGCACATGTCAGGGTTGACAAAATGTATGAAATGTTAAAGACCAAGCTAGCTAAGGACGCTCCCATTCAGCTTCTATTGTGTATTCTTCCAGAGAGAAAGAATTCTGAGATTTATGGTCCTTGGAAAAGAAGAAGTCTTGCTGATGCAGGGATTGCAACACAATGTATTGCACCAACAAAACTTGGTGGGATGAATTCTTATCTGTTATCGGAGAGAGAGCGTGAAATGCCTCTTGTTTCTGATGTACCTACCTTGATTATTGGTATGGATGTTTCACATGGATCTCCTGGTAGATCAGATGTGCCATCTTTTGCTGCGGTTGCAAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCAGTTCGCACTCAATCATCCAAAGTTCAGATGATTGAATCTCTATTCCAGCCTGTTTCTGACACTGAAGATAAGGGTATCATGAGGTGTGTATTCTCTAATAAATCTGATGTAAATTTCTGTACCAATTATGGGTGCCATGTGTTTTATTTTAGGGATGGAGTGAGTGAATCACAGTTCAACCAAGTCCTGAACACTGAACTTAATGAAATCATTATGGCATGCAGACACCTTGATGAGAGGTGGAATCCGAAGTTCACTTTGATTGTTGCGCAGAAGAATCATCATACTAGGTTCTTCAAGGTCGACTCTGCAGACAATATTCCACCTGGAACTGTTATTGACAGCAATGTTTGTCATCCCAAAAACAATGACTTCTACATGTGTGCCCATGCTGGAATGATTGGAACAACTCGACCTACTCATTATCATGTTTTACATGATGAGATTGGATTCTCAGCAGATGATTTGCAAGGCCTTGTGCATTCTCTATCTTATGTGTACCAGAGGAGCACAACTGCCATATCAATAGTTGCCCCCATTTGCTATGCCCATTTGGCAGCTACCCAGATGGCACAATTTATCAAGTTTGATGAATTTTCAGAGACTTCTTCTAGCCATGGTGGACTCACATCTTCTGGTGTTGCTCAGGTGCCTGAATTACCCCGTCTTCATGAAAATGTCGTTAACTTCATGTTCTTCTGTTAA 2565 0.4183 MKRTSDTTRLPVARRGIGSKGDPIALLTNHFRVAVSKNDGCFYHYNVAMWYEDGHPVEGKGVGRKVIDKVCETYDDVLKSKNFAYDGEKSLFTVGSLPSNKHELTVVLSGVSSKSADSPTAGDSKRMRRQSQSKSVKVEISYAAKIPLQAIADALRGQDSMHSQEALRVLDIVLRQHAAEQGCLLVRQSFFHDNPTNYTDIGGGVGGVSGFYSSFRATQKGLSLNVDVSTTLLVRPGPVVDFLVLNQEVQHPNFIDWAKAKRMLKNLRIKANNIEFKITGLSEKPCRSQTFLLRHGKDENGEVQSSEITVYDYFKHHKKIELRYSADLPCINVGRSKRPIYFPVELCNLVSLQRYTKALTNLQRSQLVQKSRQNPREKQVALQDSLRNSKYDDEPMLRSFGITIDPNFTPVNGRTLKPPNLLFGGDENFAPTKGRWNFNKKRIVDPVIIEHWAIVNFSARCNIDHLCNTLRTCSQMKGVIKRPPLSVFHEESRFRREPAHVRVDKMYEMLKTKLAKDAPIQLLLCILPERKNSEIYGPWKRRSLADAGIATQCIAPTKLGGMNSYLLSEREREMPLVSDVPTLIIGMDVSHGSPGRSDVPSFAAVASSRCWPQISRYRAAVRTQSSKVQMIESLFQPVSDTEDKGIMRCVFSNKSDVNFCTNYGCHVFYFRDGVSESQFNQVLNTELNEIIMACRHLDERWNPKFTLIVAQKNHHTRFFKVDSADNIPPGTVIDSNVCHPKNNDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADDLQGLVHSLSYVYQRSTTAISIVAPICYAHLAATQMAQFIKFDEFSETSSSHGGLTSSGVAQVPELPRLHENVVNFMFFC. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07640 854 SMART PAZ_2_a_3 237 376 IPR003100 GO:0005515
Seca4g07640 854 SMART DUF1785_2 184 236 IPR014811 -
Seca4g07640 854 Pfam PAZ domain 241 367 IPR003100 GO:0005515
Seca4g07640 854 CDD PAZ_argonaute_like 236 350 - -
Seca4g07640 854 ProSiteProfiles Piwi domain profile. 558 815 IPR003165 GO:0003676
Seca4g07640 854 SUPERFAMILY Ribonuclease H-like 505 813 IPR012337 -
Seca4g07640 854 Gene3D - 415 569 - -
Seca4g07640 854 SUPERFAMILY PAZ domain 231 391 IPR036085 GO:0005515
Seca4g07640 854 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 817 - -
Seca4g07640 854 Gene3D paz domain 230 355 - -
Seca4g07640 854 Pfam Piwi domain 557 815 IPR003165 GO:0003676
Seca4g07640 854 SMART Piwi_a_2 522 815 IPR003165 GO:0003676
Seca4g07640 854 FunFam Protein argonaute 3 574 854 - -
Seca4g07640 854 Pfam Argonaute linker 1 domain 186 232 IPR014811 -
Seca4g07640 854 Pfam N-terminal domain of argonaute 23 174 IPR032474 -
Seca4g07640 854 Gene3D - 573 854 IPR036397 GO:0003676
Seca4g07640 854 Pfam Argonaute linker 2 domain 384 422 IPR032472 -
Seca4g07640 854 ProSiteProfiles PAZ domain profile. 276 351 IPR003100 GO:0005515
Seca4g07640 854 MobiDBLite consensus disorder prediction 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07640 Seca-Chr4 174265016 174275416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07640 4 854 Eukaryotic Initiation Factors Gene Family AT1G48410 33.552 8.01e-146 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07640 K11593 - pop:7486850 1107.43