Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07639 ATGGATTCACTGCCACCTCCACCAGAGAAAATTCCCCCAAATGTTGTTCCTCTGATCGCAGAATCAGCAAAAATGTTGGAGCCAATGAAAAAGACATGTGATACAAAACGTTTGCCTGTGGCTAGGAGAGGTATTGGAACCAAAGGACAGAAGATACGACTCTTAGCTAACCATTTTCGAGTTGTTGTGAGCAAGAATGATGGCTACTTCTATCATTACAGTGTTTCCATGTGTTATGAAGATGGCCACCCGGTTGAAGTGAAGGGCATTGGGAGAAAGGTCATAGATAAACTTTGTGAAACATATGGTGTGTTAGAAAACAAGAACTTTGCATATGATGGTGAGAAAAGCTTATTCACTGTTGGTTCTCTACCACATAATAAGCAGGAGTTTGTTGTTGTGTTGGAGGAAGTTTCTTCAAAGAGGGTTGGAAGGAATGGGAGCCCTGACAACACAAATGATGGAGACTCCAAGAGAATGAGGCGTCAATCTCAGTCTAAAACTGTTAAGGTGGAGATCAGTCATGCAGCCAAAATCCCAATGCAAGCTATTGCAAATGCTTTACGTGGTCAGGATTCCGATCAATTCCAAGAAGCATTGAGGGTTCTGGACATTATACTGAGGCAGCATGCAGCCGAGAAGGGATGTCTACTTGTTCGCCAATCCTTCTTTCATGACAATCCGAGAAATTATACTGATTTAGGAGGTGGTGTTCAAGGTTGTCGTGGTTTCCATTCAAGCTTCCGAGCTACACAAGGGGGTTTATCTCTGAATGTTGATGTGTCAACTACAATGGTTGTAAAGCCTGGTCCTGTGCTGGACTTCCTTCTCCAGAATCAGAATGTTCAACAACTAAACTTAATTGATTGGGCCAAGGCAAAAAGAATGCTGAAAAGCCTCAGAATTAAGGCTAATAATAGAGAGTACAAAATCACTGGACTGAGTGAGAAGCCCTGCAGGACACAGACATTTTTATTGAAACATGGAAGGGATGCCAATGGTGAAGTGCAGTCAAGTGAGATCACGGTTTATGACTACTTTAAACGCCATAAAAAGATTGAGCTGCGCTATTCTGCTGATTTTCCATGCATCAATGTTGGCAAATCAAAACGTCCCTCTTATTTTCCTGTAGAGCTATGCACATTGGTCTCATTGCAACGGTATACCAAGGCATTGACAAATTTGCAAAGGGCTCAGTTGGTGGAGAAATCAAGGCAAAAGCCCCCTGAAAGGAAAGCAGCCTTGCAAGATTCCTTAAGAAGCAGCAGATATGGTAATTATCCTATGCTTCGGTCTTCTGGGATCAACATTGAACCTAACTTTATTCAAGTTGATGGACGTGTTCTGCAAGCTCCAAGGCTTGTAGTTGGACAGGGAGATAACTTTTTCCCCCGCAATGGGCGCTGGAATTTCAACAATAAGAAACTAGTTGAACCTTTCAAGTTAGAGCGCTGGGCCATTGTAAACTTCTCAGCTCGGTGTGATACACGACACCTGTGCAACACCATTAAGAATTGTGCTGCAATGAAAGGGATGGACTTAAATCCTCCATTCCAAATATTTGAAGAGGATGGTCGCTTCAGGCGTGAGCCAGCACATGTCAGGGTTGACAAAATGTATGAAATGGTAAAGCCCAAGCTGCCTGGGTCCCCTCAGTTTCTGTTGTGTATTCTTCCAGAGAGAAAGAATTCTGATATTTATGAAATCTATCCTTTGTATGCGTTTTTTTCTCATTTAATTGCTGTCATGCAGCTTGGTGGGATGAATTCCTTTCTGTCAATAGAGGACTCACGTTCCATACCTCTAGTTTCTAATGAACCTACCTGGATTCTTGGCATGGATGTTTCACATGGATCTCCTGGTAGATCAGATGTACCATCTATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCAGTTCGTACTCAGTCACCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGATACCGAGGATGAGGGTATCATCAGGGAGCTGCTTATGGACTTTCACATAACTTCAGGGAAAAGGAAGCCTGAGCAAATTATAATTTTCAGGGATGGAGTGAGCGAATCACAGTTCAACCAAGTCCTGAACATTGAATTGGATGAAATCATTAAGGTATCAGAGGAGTACAACTGCCGTATCATTGCCCCTGTTTGCTATGCTCACTTGGCAGCTGCCCAGATGGCCCAATTTATTAAGTTTGATGAAATGTCTGATACTTCTTCTAGCCATGGTGGACTGACATCTGTTGGTGTACCTCAAGTTCCTCAATTACCCCGCCTTCACATAGATGTTGCCAATTCCATAGGATGTCTCCTTGTTCGCCAATCCTTCTTTCATGACAATCCAAGAAATTATACTGATATAGGAGGTGGTGTTCAAGGTTGTCGTAGTTTCCATTCAAGCTTCCGAGCTACACAAGGGGGTTTATCTCTGAATGTTGCTATGCACATTGGTCTCATTGCAAAGGTATACCAAGGCACTCAAAATTTGCAAAGGGCTCAGTTGGTGGAGAAATCAAGGCAAAAGCCCCTTGAAAGGAAAGCAGCCTTGCAAGATTCCTTAAGAAGCAGCAGATATGGTAATTATCCTATGCTTCGGTCTTCTGGGATTAACATTGAACCTAACTTAATTCAAGTTGATGGACGTGTTCAGCAAGCTCCAAGGCTTGTAGTTGGACGCACAGAGGACTTTCTTCCACGGAATGGGCGCTGGAATTTCAACAATAAGAAACTATTTGAACCTGTAAAGATTGAGCGCTGGGCCATTGTAAACTTCTCAGCTCGGTGTGATACAAGACATCTATGCAACACTCTTAGGAATTATGCTACAATGAAAGGGATGCACTTAAATCCTCCATTCCAAATATTTGAAGAGGATAGTCGCTTCAGGCGTGATCCAGCACATGTCAGGGTTGACAAAATGTATGAAATTTTAAAGGCCATGATGCCTAAGAACCCTCCGACTCAGCTTCTATTGTGTATTCTTCCAGAGAGAAAGAATTCTGCTATTTATGGTAGCATCATCAAGCTCAATTGA 3075 0.4263 MDSLPPPPEKIPPNVVPLIAESAKMLEPMKKTCDTKRLPVARRGIGTKGQKIRLLANHFRVVVSKNDGYFYHYSVSMCYEDGHPVEVKGIGRKVIDKLCETYGVLENKNFAYDGEKSLFTVGSLPHNKQEFVVVLEEVSSKRVGRNGSPDNTNDGDSKRMRRQSQSKTVKVEISHAAKIPMQAIANALRGQDSDQFQEALRVLDIILRQHAAEKGCLLVRQSFFHDNPRNYTDLGGGVQGCRGFHSSFRATQGGLSLNVDVSTTMVVKPGPVLDFLLQNQNVQQLNLIDWAKAKRMLKSLRIKANNREYKITGLSEKPCRTQTFLLKHGRDANGEVQSSEITVYDYFKRHKKIELRYSADFPCINVGKSKRPSYFPVELCTLVSLQRYTKALTNLQRAQLVEKSRQKPPERKAALQDSLRSSRYGNYPMLRSSGINIEPNFIQVDGRVLQAPRLVVGQGDNFFPRNGRWNFNNKKLVEPFKLERWAIVNFSARCDTRHLCNTIKNCAAMKGMDLNPPFQIFEEDGRFRREPAHVRVDKMYEMVKPKLPGSPQFLLCILPERKNSDIYEIYPLYAFFSHLIAVMQLGGMNSFLSIEDSRSIPLVSNEPTWILGMDVSHGSPGRSDVPSIAAVVSSRCWPQISRYRAAVRTQSPKVEMIASLFKPVSDTEDEGIIRELLMDFHITSGKRKPEQIIIFRDGVSESQFNQVLNIELDEIIKVSEEYNCRIIAPVCYAHLAAAQMAQFIKFDEMSDTSSSHGGLTSVGVPQVPQLPRLHIDVANSIGCLLVRQSFFHDNPRNYTDIGGGVQGCRSFHSSFRATQGGLSLNVAMHIGLIAKVYQGTQNLQRAQLVEKSRQKPLERKAALQDSLRSSRYGNYPMLRSSGINIEPNLIQVDGRVQQAPRLVVGRTEDFLPRNGRWNFNNKKLFEPVKIERWAIVNFSARCDTRHLCNTLRNYATMKGMHLNPPFQIFEEDSRFRRDPAHVRVDKMYEILKAMMPKNPPTQLLLCILPERKNSAIYGSIIKLN. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07639 1024 CDD PAZ_argonaute_like 269 383 - -
Seca4g07639 1024 FunFam Protein argonaute 7 264 388 - -
Seca4g07639 1024 Gene3D - 896 1024 - -
Seca4g07639 1024 Gene3D - 448 571 - -
Seca4g07639 1024 MobiDBLite consensus disorder prediction 152 167 - -
Seca4g07639 1024 ProSiteProfiles Piwi domain profile. 579 717 IPR003165 GO:0003676
Seca4g07639 1024 ProSiteProfiles PAZ domain profile. 307 384 IPR003100 GO:0005515
Seca4g07639 1024 Pfam PAZ domain 273 400 IPR003100 GO:0005515
Seca4g07639 1024 Gene3D - 599 724 IPR036397 GO:0003676
Seca4g07639 1024 SMART Piwi_a_2 553 745 IPR003165 GO:0003676
Seca4g07639 1024 Pfam N-terminal domain of argonaute 50 207 IPR032474 -
Seca4g07639 1024 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 39 723 - -
Seca4g07639 1024 SUPERFAMILY PAZ domain 264 424 IPR036085 GO:0005515
Seca4g07639 1024 SUPERFAMILY Ribonuclease H-like 892 1020 IPR012337 -
Seca4g07639 1024 SUPERFAMILY Ribonuclease H-like 537 724 IPR012337 -
Seca4g07639 1024 MobiDBLite consensus disorder prediction 142 167 - -
Seca4g07639 1024 Pfam Argonaute linker 1 domain 786 826 IPR014811 -
Seca4g07639 1024 Pfam Argonaute linker 1 domain 219 267 IPR014811 -
Seca4g07639 1024 Pfam Argonaute linker 2 domain 410 454 IPR032472 -
Seca4g07639 1024 SMART PAZ_2_a_3 270 406 IPR003100 GO:0005515
Seca4g07639 1024 Pfam Mid domain of argonaute 912 963 IPR032473 -
Seca4g07639 1024 SMART DUF1785_2 217 269 IPR014811 -
Seca4g07639 1024 SMART DUF1785_2 784 831 IPR014811 -
Seca4g07639 1024 Pfam Piwi domain 582 723 IPR003165 GO:0003676
Seca4g07639 1024 Gene3D paz domain 263 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07639 Seca-Chr4 174226755 174239864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07639 42 732 Eukaryotic Initiation Factors Gene Family AT5G43810 31.843 2.47e-94 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07639 K11593 - vvi:100241029 948.732