Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07638 ATGACTGGTGTCCTTGTTGTGAGCTCAAGATGTTGGCCTCAAATTTCTCGTTATAGAGCTGCCGTTCGCACTCAGTCATCCAAAGTTGAGATGATTGCATCTCTATTTAAGCTTGTTTCTGGTAACAAGGATGATGGTATCATAAGGGAGTTGCTTTTGGACTTTTACCGGAGTTCAAGACAAACCAAGCCTGAACATATAATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAAGTCCTGAACATTGAATTGGATGAAATCATTAAGGAACTGTCATTGACAACAATATTTGTGATCCCAAAAACAATGACTTCTACATGTGTGCTCATGCTGGGAAGATTGTATTATAACTGCTATATCATTGCCCCCGTTTACTATGCTCACTTGGCAGCTGCTCAGATGGTCCAATTTATAAGTTTGATGAAATGTCTGATACTTCTGACATCTGTTGGTGTACCTCAAGTTCCTCAACTACCCCGCCTTCACCAAAATGTCATTAACTCCATGTTCTTCTGTTAA 528 0.3996 MTGVLVVSSRCWPQISRYRAAVRTQSSKVEMIASLFKLVSGNKDDGIIRELLLDFYRSSRQTKPEHIIIFRDGVSESQFNQVLNIELDEIIKELSLTTIFVIPKTMTSTCVLMLGRLYYNCYIIAPVYYAHLAAAQMVQFISLMKCLILLTSVGVPQVPQLPRLHQNVINSMFFC. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07638 175 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 94 - -
Seca4g07638 175 Pfam Piwi domain 6 94 IPR003165 GO:0003676
Seca4g07638 175 SUPERFAMILY Ribonuclease H-like 14 99 IPR012337 -
Seca4g07638 175 Gene3D - 2 175 IPR036397 GO:0003676
Seca4g07638 175 ProSiteProfiles Piwi domain profile. 52 94 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07638 Seca-Chr4 174224092 174226485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07638 6 92 Eukaryotic Initiation Factors Gene Family AT5G43810 45.055 3.36e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07638 K11593 - vvi:100260151 137.887