Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07637 ATGGGGTCTCAAGGTTGTAGTGTTAATAATGGAAAACATTCACAACTCCAGCCTTTGGTGCGGCAAAACTCAATGTACAGTCTTACACTTGATGAAGTTCAGAGTCAGTTAGGTGACTTGGGAAAGCCACTAAGTAGTATGAACCTTGATGAGCTTCTGAAAAATGTATGGACTGCCGAGGCAAACCAATCCATTGGTATGGAAACTGAGGACACACCTCAAGCCGGTCAAGCTACTCTGCAGCATCAAGCTAGTGTGTCATTAACCGGTGCACTAAGCAAGAAGACAGTTGATGAAGTTTGGAGAGATATCCAACAGGGCAAAGATAATAAGGAGAAGAAGACTCAAGAAAGACAGCCTACTCTGGGAGAGATGACATTGGAGGATTTCCTGGTGAAAGCAGGGGTTGTTGCTGAATCATCTTCTGATAATAGAAACAACACTGGTCCTACAGTTGGTGTTAATTCAAATGTAGCAGCACGGCAGTTTCCTCCACATGGTCCGTGGATACAGTATCCACAACCACAATATCAGCATCCACAACAAAATTTAATGGGGGTTTATGTGCCTAGCCAGAATATAGCACAGCCATTACACATTGGGGCTGGTGCTCCATTGGATGTTCCATTTGCAGATGGTCAGGTGGCAGCATTGCCTTCACCTGTGATGGGAACCTTGTCAGATACAAAAAAAAATGGGAGAAAACGGGGCGCATCAGAGGACATGGTAGAGAAGACTGTTGAGAGGAGACAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCAAGAGCAAGGAAACAGGCTTACACAACTGAATTAGAGCACAAAGTCTCACGTCTGGAGGAGGAAAATGAAAGGCTGAGGAAACAGAAGAAGCTAGAGAACATCTTATCCAGTGTTCCACCACCAGAACCTAGATATCAGATTAGCCGTACATCATCAGCTCCATTCTAA 960 0.4479 MGSQGCSVNNGKHSQLQPLVRQNSMYSLTLDEVQSQLGDLGKPLSSMNLDELLKNVWTAEANQSIGMETEDTPQAGQATLQHQASVSLTGALSKKTVDEVWRDIQQGKDNKEKKTQERQPTLGEMTLEDFLVKAGVVAESSSDNRNNTGPTVGVNSNVAARQFPPHGPWIQYPQPQYQHPQQNLMGVYVPSQNIAQPLHIGAGAPLDVPFADGQVAALPSPVMGTLSDTKKNGRKRGASEDMVEKTVERRQKRMIKNRESAARSRARKQAYTTELEHKVSRLEEENERLRKQKKLENILSSVPPPEPRYQISRTSSAPF. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07637 319 Gene3D - 247 301 - -
Seca4g07637 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 292 IPR004827 GO:0003700|GO:0006355
Seca4g07637 319 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 20 318 IPR043452 GO:0003700|GO:0045893
Seca4g07637 319 MobiDBLite consensus disorder prediction 295 319 - -
Seca4g07637 319 Coils Coil 268 299 - -
Seca4g07637 319 Pfam bZIP transcription factor 249 292 IPR004827 GO:0003700|GO:0006355
Seca4g07637 319 MobiDBLite consensus disorder prediction 229 274 - -
Seca4g07637 319 SMART brlzneu 245 301 IPR004827 GO:0003700|GO:0006355
Seca4g07637 319 MobiDBLite consensus disorder prediction 221 274 - -
Seca4g07637 319 SUPERFAMILY Leucine zipper domain 249 294 IPR046347 GO:0003700|GO:0006355
Seca4g07637 319 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 247 299 - -
Seca4g07637 319 CDD bZIP_plant_BZIP46 249 295 - -
Seca4g07637 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07637 Seca-Chr4 174213500 174222422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07637 17 319 bZIP Transcription Factor Family AT3G56850 55.519 2.71e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g07637 bZIP_1 4.4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07637 K14432 - gmx:100784924 482.256