Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07622 ATGGATGTTGGAGGTGAGGTCTTTAAGAGGGTAACAGATTTGACTGCTGATGATATACTAGTGTTACAGTTTGGTTCTCAAAAGGAAGCATATGTATTTTACAGTGAATATGCTAAAGCTCATGGATTTGTTGTAAGGAAAGACGAGGTAAAGAAGGATGTTAGGGGGAACATTGTGATGCGGCAATTTGTATGCAATAGGGAAGGACTAAGAAATAAAAAACATTTAATGAGACTTCGAATTCGCTTTAATCGAAAGAAATCCAAATGGAGAGTGGTATCCTTTGTGGAGGCCTATAACCATGAGTTAACCCTATCTAGGTATGTGCATTTACACTCTGCTTATCGTAAGTTGTCAGATGGAGATAAGGCTCAGGTAGATAACTTACATACACATGATGTGAGAACATGTCACATTATGGGGTATATGTTGGCTCAGAAGGGGGGATACAGTAATCTTGGTTTTTCAAGAAAGGATGTGTACAACTATATTGATAGTAAGTCTCGTGGTAAGATAAAGGATGGAGATGCACTTGTTGGCCTTAGTTATTTGAAAGGTGGCACATGA 567 0.3845 MDVGGEVFKRVTDLTADDILVLQFGSQKEAYVFYSEYAKAHGFVVRKDEVKKDVRGNIVMRQFVCNREGLRNKKHLMRLRIRFNRKKSKWRVVSFVEAYNHELTLSRYVHLHSAYRKLSDGDKAQVDNLHTHDVRTCHIMGYMLAQKGGYSNLGFSRKDVYNYIDSKSRGKIKDGDALVGLSYLKGGT. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07622 188 PANTHER OS01G0519700 PROTEIN 22 184 - -
Seca4g07622 188 Pfam FAR1 DNA-binding domain 33 103 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07622 Seca-Chr4 173817799 173818421 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g07622 FAR1 1.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07622 - - ccaj:109792835 242.276