Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07608 ATGACATTTGATGCGCTTCGAAGAAGGCTCTGCCAACTTGAAGATGCCAAGGAATTGAGCACTGGTTCAATCAAGCGTGCAGATTTAAAAGCTTGCAATACTTTGATGACCAAAGGAATTCGAACAAACATGAGGAAGAGAATTGGATTAGTTCCTGGGATTGAGATTGGGGACATTTTCTTTTTCCGAATGGAATTATGTATTGTGGGTTTGCATGCACCCTCCATGGGTGGAATTGATGCCTTGCATTTCAGGGGCGAGTTTGAGGAAGAAACTTTGGCTGTAAGCATTGTTTCATCAGGAGAATATGATGATGATGCAGAGGATAATGATGTTATAATTTATACTGGTCAGGGTGGGAACTTCAACAAGAAGGACAAGCAAGTGATAGATCAGAAGCTTCATAGGGGTAATCTTGCTTTGGATAGAAGTTCACGAAAACGCAATGAAGTAAGAGTCATCCGGGGCATGAGAGATGCTGTGAATCCAAGTGCAAAAATCTATGTCTATGATGGTCTGTATAAAATTGAAAATTCATGGATAGAAAAAGCAAAAAGTGGCGGTGGTGTATTTAAGTATAAGTTGGTAAGAATGCCTGGACAGCCTAGTGCCTTTGCTGTTTGGAAATCGGTTCAGAAGTGGAAGTCTGGCTTCCCTTCGAGGACTGGACTTATTCTTGCAGACCTCTCCTCAGGAGCTGAGAGTATACCTGTCTCACTTGTCAACGATGTTGATAATGTGAAGGCGCCTGCTTATTTCACATATTTCCATTCTCTTCGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACATGGGTGCAACTGTACTAAAGCATGCGTCCCTGGTGATTTGAACTGCTCTTGCATTAGGAAAAATGAAGGTGATTTTCCATATACAGGCAATGGCATTCTGGTGAGTCGAAAACCATTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGCATCCCAAACTGGTTTAAAGCACCACATGGAAGTGTTCAGAACAAAGGACAGAGGGTGGGGTCTTCGATCACTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAGGTTAAGTCAGCTTGTGAAGGAAGGAGATAATGATGAGTATGTTTTTGATACAACCCGAAATTATGATCCATTCAAGTGGAATTATGAGCCTAGCTTACTGGAAGAAGTGGGTACCAATGACTCTAGTGAGGATTACGCTATCCCATATCCTCTAATTATAAGTGCCAAAAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTATTATATGAAGAAAACAACCAATCCTTCCTCCATGTTGCCTTTTTTGCACTCAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGATTTGTCAGATCAAATCATGCCGAGGGTAGCAGTGCACCCAAAGGGAGAAAGAAATGCTTATGTGGATCATCAAAATGCCGCGGTTCTTTTGGTTGA 1545 0.4168 MTFDALRRRLCQLEDAKELSTGSIKRADLKACNTLMTKGIRTNMRKRIGLVPGIEIGDIFFFRMELCIVGLHAPSMGGIDALHFRGEFEEETLAVSIVSSGEYDDDAEDNDVIIYTGQGGNFNKKDKQVIDQKLHRGNLALDRSSRKRNEVRVIRGMRDAVNPSAKIYVYDGLYKIENSWIEKAKSGGGVFKYKLVRMPGQPSAFAVWKSVQKWKSGFPSRTGLILADLSSGAESIPVSLVNDVDNVKAPAYFTYFHSLRHPKSFSLMQPSHGCNCTKACVPGDLNCSCIRKNEGDFPYTGNGILVSRKPLVHECGPTCQCFPNCKNRASQTGLKHHMEVFRTKDRGWGLRSLDPIRAGTFICEYAGEVIDRARLSQLVKEGDNDEYVFDTTRNYDPFKWNYEPSLLEEVGTNDSSEDYAIPYPLIISAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMTELTYDYGFVRSNHAEGSSAPKGRKKCLCGSSKCRGSFG. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07608 514 ProSiteProfiles SET domain profile. 336 483 IPR001214 GO:0005515
Seca4g07608 514 Gene3D SET domain 219 513 IPR046341 -
Seca4g07608 514 SMART G9a_1 44 201 IPR003105 -
Seca4g07608 514 Pfam Pre-SET motif 230 328 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca4g07608 514 SMART set_7 336 489 IPR001214 GO:0005515
Seca4g07608 514 ProSiteProfiles Post-SET domain profile. 498 514 IPR003616 -
Seca4g07608 514 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 508 - -
Seca4g07608 514 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 32 216 - -
Seca4g07608 514 Pfam SET domain 347 483 IPR001214 GO:0005515
Seca4g07608 514 ProSiteProfiles Pre-SET domain profile. 272 333 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca4g07608 514 SMART preset_2 226 320 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca4g07608 514 SUPERFAMILY SET domain 235 511 IPR046341 -
Seca4g07608 514 SUPERFAMILY PUA domain-like 31 218 IPR015947 -
Seca4g07608 514 Gene3D - 31 217 IPR036987 -
Seca4g07608 514 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 514 IPR025794 GO:0016571
Seca4g07608 514 Pfam SAD/SRA domain 48 201 IPR003105 -
Seca4g07608 514 ProSiteProfiles YDG domain profile. 49 197 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07608 Seca-Chr4 173511023 173513845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07608 1 514 Su(var)3-9 homologs AT5G04940 63.424 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g07608 SAD_SRA 4e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07608 K24405 - gmx:100812173 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07608 4 173511023 173513845 Seca4g07608 4 173511023 173513845 ECH