Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07605 ATGACTGGGAAGAAAGAGAAACAGAAAGACAGCGATAGCGAGGAAGACGACATATTCTACTACCGTTATTGCGCTGCATCATCCACCTCCTCAAAACCCGACGCCGCAAACGCAACCCAGACCCAACCCATACCCAAGAACAACAAGGGAGGATCAGGATCGTTGGCTCCTTCCAAATCAACGGTCTACGTTTCGAACCTGGACTATTCCCTAACTAACTCCGACCTCCACATTCTTTTCTCAACCTTCGGCCGCATCGCTCGCGTAACCGTCCTCAAAGACCGCCACACGCGCCTCAGCCGCGGCGTTGCCTTCATCCAGTTCGTTTCCCGCCACGACGCTCTCCGTGCCGCCTCTGAAATGCACCATAAGATCCTCAACGGCCGCACTCTCACCGCCTCCATCGCCGCCGATAACGGCCGCGCCCCCGAGTTCATCCGCAAGCGCGTGTACACTGACACCGCCCGCTGCTTCGAGTGTGGGGCTTCCGGCCACCTCTCTTATGAATGCCCGAGGAACCAATTGGGCCCTCGCCCCCGTCCCCAGCCCAAGCGGATCCGCCGAGGGTTCGGACGGCCCAAGGACGAGGAGGAGGATGAGGACGATGACGATGGCGGAGGAATTGGCGGCAGGGAGCGGTTTGAGGATGACAACTGGGCTTCCATCGTGGATGACGGAGCGGATGAGAGGCTGTTGGGGAGGAGCGGAAAGGACGAGGTTGTGGCCAAGAAGAAGAAGGCTAAGAAAGCTGGGTACTTCAGTGACGAAAGTGACCATGAGGATGATGATGATTGA 795 0.5786 MTGKKEKQKDSDSEEDDIFYYRYCAASSTSSKPDAANATQTQPIPKNNKGGSGSLAPSKSTVYVSNLDYSLTNSDLHILFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDALRAASEMHHKILNGRTLTASIAADNGRAPEFIRKRVYTDTARCFECGASGHLSYECPRNQLGPRPRPQPKRIRRGFGRPKDEEEDEDDDDGGGIGGRERFEDDNWASIVDDGADERLLGRSGKDEVVAKKKKAKKAGYFSDESDHEDDDD. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07605 264 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 3 144 - -
Seca4g07605 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Seca4g07605 264 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Seca4g07605 264 SUPERFAMILY RNA-binding domain, RBD 37 143 IPR035979 GO:0003676
Seca4g07605 264 SUPERFAMILY Retrovirus zinc finger-like domains 141 173 IPR036875 GO:0003676|GO:0008270
Seca4g07605 264 MobiDBLite consensus disorder prediction 169 264 - -
Seca4g07605 264 ProSiteProfiles Zinc finger CCHC-type profile. 156 172 IPR001878 GO:0003676|GO:0008270
Seca4g07605 264 SMART rrm1_1 61 134 IPR000504 GO:0003723
Seca4g07605 264 Gene3D - 2 144 IPR012677 -
Seca4g07605 264 SMART rrm2_1 61 134 IPR003954 GO:0003676
Seca4g07605 264 MobiDBLite consensus disorder prediction 28 55 - -
Seca4g07605 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Seca4g07605 264 MobiDBLite consensus disorder prediction 206 256 - -
Seca4g07605 264 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 261 IPR044598 GO:0000398|GO:0005689
Seca4g07605 264 Gene3D - 147 183 - -
Seca4g07605 264 Pfam Zinc knuckle 157 171 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07605 Seca-Chr4 173179376 173180170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07605 60 136 Eukaryotic Initiation Factors Gene Family AT1G49760 36.364 3.42e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07605 K13154 - psat:127137475 301.982