Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07590 ATGAACAAGATTGAATTCCAAACAGAAGTGCTTATAGGCCCTGCTGCTCAGGTTATTTCTGAGGCTGCAAGAAAATTTCGTGCTACAAGTTTGATACTTGATAGACAGATGCACAAAGATAAGAAGTATTTCATGCACCGAATCCGTTATGGTATGTATAGGATAACAAGTGACAACTCCATTGAAAAGTTGAAAGATCCGAATTCAACAGCCGCCAAACTTGCTGAAAGGCAAGAAAATGTAAGCTATGGAGAAATGATACCAGGAAGCACTGAGGAAGCAGTTTCTATTCAGATGTCCAGGTCCTCATCAAGTGATCTGTTCACATTACCTGGAGTTTCAAGTCAGTGGAGTACTGAAGCCTCTACTTCTAGTATTGGTGGAAGTTCACAATATGTAGAACAAGAAACAAAAGAGAACAGATCACTATTTCACATTTCTGTGAATCAAGAAACAAGTCAAACAGAAGTAAATCAAAAAGAGAGACTAATTGATTACAAGGAACAGCAAAGCAGCAATAATGAAACATCTCATATGGAGGAAGAATTTACAAATCCACTTTGTTCAGTGTGCAAGAATAGGAGACCAAAAATTGGATGCAAGATAGACTTGAGTTATGCAGAGCTCTACACTGCTACCCAGGGATTTTCTGCTAAGAACTTTCTGTCAGAAGGTGGGTTTGGATCTGTCTACAAAGGACAGCTAAATGGAATGACAGTTGCTGTTAAGCAACATAAAAGTGCAAGCTTCCAAGGAGAGAAGGAATTCAAGTCTGAAGTCAATGTACTTAGCAAAGCAAGACATGAGAATGTGGTCATGCTACTAGGTTCATGCGCAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTCTGCAATGGATCACTTGACCAACATCTCTCAGTACACTCTCGGTCACCTCTTACTTGGAAAGATAGGATGAACATAGCTCTTGGAGCAGCCAAAGGCTTACTATACTTACACAAAAATAACATAATACACAGAGACGTGAGACCAAACAATATCCTTATAACACATGATCATCAACCAATGCTGGGAGACTTTGGATTAGCACGAAATCAAAATCAAGACTCAATACACTCAACCGAAGTTGTTGGAGCTTTGGGGTATTTGGCACCAGAGTATGCAGAACATGGCAAAGTGTCAACTAAAACAGATGTATATTCTTTTGGGGTGGTTCTACTACAGCTTATAACTGGAATGAGAACTACAGACAAAAGACTCGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAGAGATAGGAATTATCCAGATTTAATTGATGAAAGGATCATTAACTCTTATGATTACCATCAACTGTTTTGGATGGTACGGATAGCAGAAAAATGTCTAAGCAGGGACCCTAAGAAGAGACTAAATATGGTTGCGGTAGTTAATGCTTTAACTGACATTGTGGAAGGCAACACATGTGACATTGGAATGAGAGATTACTCCCCTGCAAGGTCAGATTCATCCTATAGTGGATCAGATTTTGATGAATCTGAAGATGAAATGTTGGGACGCTTTGAGATTGAAGGTGAGTTACAAAGTCACAGTTCAGAATCCCCAACATGTAATAGCATAAGTCAGATTATTGTAAGACAGCCACCATCCCCTCCAATTCAGAGCATCTCTTCAAGTGGCGCAAGTTCATTTAAGTTCTATGATGAATCAAATAGTAATTGTGAAGCACATGATGAAGGGAATATAGAAATGTCAAAATCAAATGTGGGGTTACTCAATTCTTAG 1779 0.3907 MNKIEFQTEVLIGPAAQVISEAARKFRATSLILDRQMHKDKKYFMHRIRYGMYRITSDNSIEKLKDPNSTAAKLAERQENVSYGEMIPGSTEEAVSIQMSRSSSSDLFTLPGVSSQWSTEASTSSIGGSSQYVEQETKENRSLFHISVNQETSQTEVNQKERLIDYKEQQSSNNETSHMEEEFTNPLCSVCKNRRPKIGCKIDLSYAELYTATQGFSAKNFLSEGGFGSVYKGQLNGMTVAVKQHKSASFQGEKEFKSEVNVLSKARHENVVMLLGSCAEGNNRLLVYEYVCNGSLDQHLSVHSRSPLTWKDRMNIALGAAKGLLYLHKNNIIHRDVRPNNILITHDHQPMLGDFGLARNQNQDSIHSTEVVGALGYLAPEYAEHGKVSTKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLRDRNYPDLIDERIINSYDYHQLFWMVRIAEKCLSRDPKKRLNMVAVVNALTDIVEGNTCDIGMRDYSPARSDSSYSGSDFDESEDEMLGRFEIEGELQSHSSESPTCNSISQIIVRQPPSPPIQSISSSGASSFKFYDESNSNCEAHDEGNIEMSKSNVGLLNS. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07590 592 Gene3D Transferase(Phosphotransferase) domain 1 291 493 - -
Seca4g07590 592 SMART tyrkin_6 216 478 IPR020635 GO:0004713|GO:0006468
Seca4g07590 592 MobiDBLite consensus disorder prediction 570 592 - -
Seca4g07590 592 FunFam Proline-rich receptor-like protein kinase PERK8 178 290 - -
Seca4g07590 592 ProSiteProfiles Protein kinase domain profile. 216 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07590 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 332 344 IPR008266 GO:0004672|GO:0006468
Seca4g07590 592 SUPERFAMILY Protein kinase-like (PK-like) 204 484 IPR011009 -
Seca4g07590 592 PANTHER OS01G0253100 PROTEIN 113 482 - -
Seca4g07590 592 Pfam Protein tyrosine and serine/threonine kinase 219 477 IPR001245 GO:0004672|GO:0006468
Seca4g07590 592 Gene3D Phosphorylase Kinase; domain 1 169 290 - -
Seca4g07590 592 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 291 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07590 Seca-Chr4 172673522 172680211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07590 204 489 Trihelix Transcription Factor Family AT1G70460 46.801 2.63e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca4g07590 PK_Tyr_Ser-Thr 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07590 - - gsj:114417376 827.78