Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07580 ATGAAAATTGCTGTTGGAGCTGCAAAGGGTCTAGCTTTTCTTCATGAAGCAGAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTCTTAGACTCAGATTACAATGCAAAACTTTCTGATTTTGGGTTGGCAAAAGATGGACCTGAAGGTGATGACACCCATGTTTCAACCAGAGTTATGGGCACACAAGGCTATGCAGCCCCCAGAATATGTCATGACAGCTTTGGAGTTGTGCTATTGGAGTTGCTAACTGGGGGAAGATCAGTGGACAAGAATAAACCTCCAAGGGAACAGAACCTAGTGGAATGGGCAAGGCCAATGTTACATGATTCAAGGAAACTTAGTAGGATAATGGATCCTAGACTTGAAGGGCAGTTTTCTGAGATGGGAAGTAAAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCATAGGCCAAAGCATAGGCCTACAATGAGAGAAGTGGTTAAGATTCTAGAACCCCTACAAGATTTTGATGATATTCCAATGGCACCCTTTGTTTACACTGTTCCAGCTGATATTAATGAAGTGAATAAAGAAACAAGGGACTATGATTCACCTAAGGAGAGAAGAAGGGAAAATAATGGTCACCATCACTGGAATCACCATAACAAAAATGGTCATAGGCATCATCCACTTAAATCTCCAAAATCACCAAAGCCACAAACACAGAATGATAGAATGATAGAGTTAGACACCAAAATGGCAGAGGAAGTGGGTCTAATTCTCCTCCATCACATCAGAAAGGCATAG 783 0.4151 MKIAVGAAKGLAFLHEAEKPVIYRDFKASNIFLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPRICHDSFGVVLLELLTGGRSVDKNKPPREQNLVEWARPMLHDSRKLSRIMDPRLEGQFSEMGSKKAAALAYQCLSHRPKHRPTMREVVKILEPLQDFDDIPMAPFVYTVPADINEVNKETRDYDSPKERRRENNGHHHWNHHNKNGHRHHPLKSPKSPKPQTQNDRMIELDTKMAEEVGLILLHHIRKA. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07580 260 MobiDBLite consensus disorder prediction 189 234 - -
Seca4g07580 260 SUPERFAMILY Protein kinase-like (PK-like) 2 187 IPR011009 -
Seca4g07580 260 ProSiteProfiles Protein kinase domain profile. 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07580 260 MobiDBLite consensus disorder prediction 205 226 - -
Seca4g07580 260 PANTHER OS01G0588500 PROTEIN-RELATED 1 166 - -
Seca4g07580 260 MobiDBLite consensus disorder prediction 189 204 - -
Seca4g07580 260 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
Seca4g07580 260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
Seca4g07580 260 Pfam Protein kinase domain 3 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07580 Seca-Chr4 172258771 172259840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07580 1 162 Glycoside Hydrolase AT3G07070 51.445 1.09e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca4g07580 Pkinase 4.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07580 - - cam:101488466 344.739