Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07568 ATGCTTATTTTAGTTATGGATTTCTTTGCATCTCCTATATTAACCTATGTAGAAAACAAAGCCAAAGAAGGGGGTAACACAAGGTCTTGGATTATAATTATTGCTGTTGTAATTGGAACTGTAGTGGTAGCTCTATTGGCTGTCAGCACATACTACTTCTGGTGCTTGAAACGTAAAAAAGACAAACATGCCAAACAAGAAGATGGACTAAATCCAATGTTTTCTCAAGATCAGATTGACAAGGGGGAGTCTGTGAATGCTGACCTACCTATGATGCCTCTGAGTACTATTCTAACAAGTACTGGTAGTTTTTCTGATGAATATAAATTGGGTAGAGGTGGATTTGGCACTGTTTTTAAGGGTGTTTTACCAGATGGAAAGCAAATAGCTGTTAAAAGGCTTTCAAAAACTTCTGTTCAAGGTGTGGATGAATTCAAGAATGAAGTAATATTGATTGCAAAATTGCAGCATCGAAACCTTGTGAGACTGTTGGCTTGCTGCATTGAACAAAATGAAAAGCTGCTTATCTATGAATACATGCCCAATTCAAGCCTTGATTTCCATCTATTTGATAAGGTGAAAGGTGCAGAACTTAATTGGAAACAGCGATCAAACATTATTAATGGGATTGCTAAAGGGCTCCTATATCTTCATGAGGACTCTAGACTCAGGGTTATTCACAGAGACCTGAAAGCTAGCAATATTCTATTAGATCATCAAATGAATCCAAAAATCTCAGACTTTGGACTGGCAAGAACATTTGGAGGAGACCAGTGGCAGGCAAATACAATTAAAGTTGTGGGGACTTATGGATATATGGCTCCAGAATATGCAATGGAAGGCTTGTTTTCAGTTAAGTCAGATGTTTTCAGCTTTGGTGTTATTTTGCTAGAGATCATCAGTGGAAAAAAGAATGCTAGATTCTATCTTTCAGAGCATGGTCAAAGCCTTCCCATATATGCATGGAACCTCTGGTGTGAAAGCAAAGGTTTGGAATTGATGGATCCATTAATAGAAAAGTCATGTGTACTTAGTGAAGTTCTGAAGTGTATACACATTGGTCTGTTGTGTGTACAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAGTGACTCTACCCAGGCCAACACGCCCTGCATTTTCTGTTGGAAGGGCTGTCATTGAACAAGGGTCTTCATCAAACACTTCTATCTCTGTCAATGAAGTAACTCTGTCTGAAGTGAGGCCTAGGTGA 1263 0.388 MLILVMDFFASPILTYVENKAKEGGNTRSWIIIIAVVIGTVVVALLAVSTYYFWCLKRKKDKHAKQEDGLNPMFSQDQIDKGESVNADLPMMPLSTILTSTGSFSDEYKLGRGGFGTVFKGVLPDGKQIAVKRLSKTSVQGVDEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLIYEYMPNSSLDFHLFDKVKGAELNWKQRSNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHQMNPKISDFGLARTFGGDQWQANTIKVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKKNARFYLSEHGQSLPIYAWNLWCESKGLELMDPLIEKSCVLSEVLKCIHIGLLCVQEDAADRPTMSSVVHMLASDTVTLPRPTRPAFSVGRAVIEQGSSSNTSISVNEVTLSEVRPR. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07568 420 Gene3D Phosphorylase Kinase; domain 1 66 179 - -
Seca4g07568 420 Pfam Domain of unknown function (DUF3403) 377 420 IPR021820 GO:0004674
Seca4g07568 420 SMART serkin_6 104 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07568 420 Pfam Protein tyrosine and serine/threonine kinase 108 375 IPR001245 GO:0004672|GO:0006468
Seca4g07568 420 Gene3D Transferase(Phosphotransferase) domain 1 180 382 - -
Seca4g07568 420 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Seca4g07568 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Seca4g07568 420 SUPERFAMILY Protein kinase-like (PK-like) 89 375 IPR011009 -
Seca4g07568 420 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 180 383 - -
Seca4g07568 420 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 70 179 - -
Seca4g07568 420 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 416 - -
Seca4g07568 420 CDD STKc_IRAK 110 375 - -
Seca4g07568 420 ProSiteProfiles Protein kinase domain profile. 104 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07568 Seca-Chr4 171554763 171558709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07568 28 392 Receptor kinase-like Gene Family AT4G23230 54.076 5.77e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g07568 PK_Tyr_Ser-Thr 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07568 - - gmx:100798691 656.751