Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07560 ATGGCAGTAGCATCTGAGTCCTCTAGCATCTCTGCCACCTCAGCAACCATTTCCCACAAAGTTGATGAAGAAGTCAGCAAAATGGAGGTCGAGGAGGAGGGGAAAATGAAGGAGAAAGACATCAAATCATCTGAACAAGATCAGGTTTCAAATTCTAATAATTCTCACATGGTTCTTGATTTTGTGAAACTCTCCACAGATGATTCTGTTCCTAGTGGGTCCAATCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAACAACAACAATGAAGGGAGAGAAGAGAACACAGAGGAAAAGTCAAACTCAGAGTCAAGGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCACACAAACAACAACGTGCACTAGCAAAGCGTCGCCAAGAGATGCAAAACAATGTTGGTGCTTTGGGGCACCCTCATCACTTTCCTTATTACCCTTATCCTAGTCTTTCCACCACACGCCCCTTTCATGGATCATATAATTGGTCACTCGGGGTTAGGATGGAGTCCATGATTCACAAGCCATCCTATTCAAATTCCCCACTTGGATTCAGATATGGTCATGGTCTTGGTGCTATGTGGCCATCAATTCAAGGGATCCTAAACCCTTCTTCTCATGATAGATTAAGGATTGAAGGTGCTGGGATTCTAGGTGCAAGTTCTACTTCAAGGATAGAAGATGATGATGGTGGGAGAACTATTGGAGCCATTCTCCAATTGGGAGAGTCCTCTGCAAATGCTGCTACAAGGTCAAACTTAGCCATAAACAAACCAAATATAGCCCCTAAAGGTGATCATCATTCCAACAGTGAAGAACCCTCCAACTCTGAATCCTCTGGGCTTGATCTATCACTAAAGCTTTAA 915 0.4306 MAVASESSSISATSATISHKVDEEVSKMEVEEEGKMKEKDIKSSEQDQVSNSNNSHMVLDFVKLSTDDSVPSGSNPENKGSSSCWANSSNNNNEGREENTEEKSNSESRTFSCNFCDRKFSSSQALGGHQNAHKQQRALAKRRQEMQNNVGALGHPHHFPYYPYPSLSTTRPFHGSYNWSLGVRMESMIHKPSYSNSPLGFRYGHGLGAMWPSIQGILNPSSHDRLRIEGAGILGASSTSRIEDDDGGRTIGAILQLGESSANAATRSNLAINKPNIAPKGDHHSNSEEPSNSESSGLDLSLKL. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07560 304 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 304 IPR044246 GO:0009788
Seca4g07560 304 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
Seca4g07560 304 Coils Coil 129 149 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 290 304 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 20 45 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 273 304 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 1 108 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 46 60 - -
Seca4g07560 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Seca4g07560 304 MobiDBLite consensus disorder prediction 67 94 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g07560 304 MobiDBLite consensus disorder prediction 124 143 - -
Seca4g07560 304 Gene3D Classic Zinc Finger 88 153 - -
Seca4g07560 304 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07560 Seca-Chr4 171393819 171394760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07560 104 221 C2H2 Transcription Factor Family AT5G10970 45.000 3.31e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g07560 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07560 - - gmx:102663393 227.639