Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07559 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCGGTTCCTGTTTTAGTGTCTAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGCACATATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATGCACTGCATTTGAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGAGACATCGTCAGTAGGGTTCCTGACTATGGCCATGGCCATGGCCATGGACATTCTGAGGCTGGAGCTGATGATCGTGCCCTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGCAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGCTTGAGTTGGGCCACACTGGTGGTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGTCGAGGGGCTCGAACTGTAGAAAGGGAGACCTTTCATCAGCAAGTTGAATCTGAGCCTTGCACCTCTGTTCAGCAAAGTAGCAAAGATGTTCCTATTACAAGTGTGGCAGTGGATAATGGTCCAGAGTCAAAGGAGTTGTCAAAGGAGAACACAGCAGTTACTGAGGAAAGTGCTCAATCTCTCCGTAACATTGATCTGAACGCCAACTTAAATGAAAATGAGGACAAAAATGCTTGCACTGCAGCTCAGGCCTCATTGCCTGAACCTGCCACAACAGAGATTAAGCATGAAGAAATTCCAGGTTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGACACCATGCAGCTAGCAAACCTTGGTAGTCGACTAGAAGAGGATGAGGAAGATTATGATGAGGAAGGGTAA 867 0.4614 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHGHSEAGADDRALPKRRKAAGDDCNDSDEEAKRSKMLELGHTGGTGRGRGRGRGRGRGRGARTVERETFHQQVESEPCTSVQQSSKDVPITSVAVDNGPESKELSKENTAVTEESAQSLRNIDLNANLNENEDKNACTAAQASLPEPATTEIKHEEIPGWSLSDVDKMAIDTMQLANLGSRLEEDEEDYDEEG. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07559 288 MobiDBLite consensus disorder prediction 91 181 - -
Seca4g07559 288 MobiDBLite consensus disorder prediction 91 132 - -
Seca4g07559 288 SUPERFAMILY Histone-fold 4 90 IPR009072 GO:0046982
Seca4g07559 288 MobiDBLite consensus disorder prediction 153 167 - -
Seca4g07559 288 Coils Coil 270 288 - -
Seca4g07559 288 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Seca4g07559 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 120 - -
Seca4g07559 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Seca4g07559 288 FunFam dr1-associated corepressor homolog 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07559 Seca-Chr4 171308021 171314943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07559 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.736 4.64e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g07559 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07559 K21752 - gmx:100810093 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07559 4 171308021 171314943 Seca4g07559 4 171308021 171314943 ECH