Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07546 ATGGCAGATGTTGCAGTATTGTTTGCCTTGGAGCAAGTGTTCCAACTCCTTAAGGAAGAAACAAATCTGTTGAGAGGTGTCCATAAAGATTTTTCAGACATTAAAGATGAACTTGAGAGCATTCAAGCTCTCCTCAAAGATGCTGATAGAAGGGCTGGTGATGAAGCAGACACCAATGATGGAATAAGAACATGGGTGAAGCAACTGAGAAAAGTATCTTTTCGCATAGAAGATGTCATTGATGAATACCTCTGGGTGATGCGTGGGGCCAATCATCCTCCATGTCTGCCTTTATCAGGCAAGATTGGAACCCTAATCAGAACATTGATTCCCCGTCATCAGATAGCATCTAAAATTCAGGATGTCAAGTTGACAGTTCGTGGAATCAAGGAAAGGAGTGAAAGGTATAACTTTCAAGGATCATCAAGTAGCAGCACTAGAGCAACAGAAGATGGAAGATGGCGTGATCCTCGATTGGCTTCCCTTTTCATTGAAGAATCTGAGATCGGTGCAGCTTATCGCACTGTGATTTCAGTGGTAGGAATGGGGGGACTTGGAAAAACAACTCTTGCCAAGCACGTTTTCGACAATCAAAAGGTGACAGGGCATTTTGATTGTCGTGCTTTCATCACAGTTTCTCAATCATACACTATAAGAGGGATATTGATAGACATGATGGAGCAATTTTGTAAGGAGACTCAAGAGCCTCTTCCACAGATGTTACACAAAATGGATGAGAAGTCACTAATTACAGAAGTGAGGCAATACCTTCTGCATAAGAGTAGGATCATAATCACCACTAGAATCATGCATGTTGCAGAGTTTTTCAAGAAATCCTTTCTTGTTCATATTCACACACTGCAACTCTTGCCTCCAGATAAAGCATTTAGATTTGAATTTGATGGGCATTGTCCACCAGAGCTTGAGGCTATGTCAAATGAAATTGTTCAAAAATGCAAGGGGCTACCTTTAGCAATTGTGGCCATTGGTGGTCTATTTTCAACAAAATCTAAAACTGTGTTTGAATGGCAGACAGTGAGTCAAAATTTGAGACTAGAGTTGGAGCGTAATGCCCATCTAACTAGTCTAACAAAGATTTTATCTCTTAGTTATGATGACCTGCCTTACTATTTAAAACCACGCATTTTGTATTTTGGTATATATCCAGAGGACTACTCCATTAATCATAAGAGATTAACTCGACAATGGATAGCTGAAGGGTTTGTTAAATCTGAAAAGAGAAGAACTTTAGAGCAAGTTGCAGAGGAGTACTTGTCCGAGTTGATTCATAGAAGTTTGGTTCAGGTATCAGAAATCTGCGTTGATGGGAAAGTTAAAATATGTCAAGTCCATGATTTATTACGAGAAGTGATCATTAGAAAAATGAAGGATTTAAGTTTTTGTCATCATGTACATGAAGATGATCAATCAGCCATAGTTGGGGTTACTAGACGCCTATCTATTGTTGCTAGTTCCAACAATGTGTTGAAGAGCACTAGAAACACACATATTCATGCCATTCATGTTTTTGAGAAAGGTACATCATTGAATTATGTTCCTAATAATTTGGGGATTCTTTTTCACCTAAGGTACATAAATCTAAGGAATACTAAAGTACAGGCTCTTCCTAAATCTATTGGTATGCTACAGAACTTAGAGACCTTGGATTTAAGAGAAACGCTGGTGCATCAGTTACCAAGTGAAATAAACAAGCTCATAAAGCTATGTCATCTTCTTGTTTTTCATCGAAACTACGAAGCAGATTATTCTATTTTCGGCTTCACAACTGGTGCACTGATGGAAAAGGGTATTAAAAACTTGACATCCCTACAAAATCTATATTATGTAGAGGTAGATCATGGGGGAATAGATCTCATCCAAGAGATGAGAATGTTAAGGCAGTTAAGGAAGTTGGGTTTAAGGCATGTAAAAAGGGAATATGGGAATGCCATATGTGCTTCAGTGGCCGAGATGAAACACCTTGAATCTCTTAGTATCACTGCAATAGCTGAGGATGAAATGGTTGACTTGAACTTTATATCATCCCCACTCCAACTTCGGCGGCTTCACTTGAAAGCAAGACTAGAGAAGTTGCCTGATTGGATTCCAAAACTTGAGTATCTTGTTACAATAAGGCTGTGTTTATCCAAGTTGAAAGATGATCCTCTCAAATCACTGAAAAAATTGCCATATCTGATGTAG 2202 0.3878 MADVAVLFALEQVFQLLKEETNLLRGVHKDFSDIKDELESIQALLKDADRRAGDEADTNDGIRTWVKQLRKVSFRIEDVIDEYLWVMRGANHPPCLPLSGKIGTLIRTLIPRHQIASKIQDVKLTVRGIKERSERYNFQGSSSSSTRATEDGRWRDPRLASLFIEESEIGAAYRTVISVVGMGGLGKTTLAKHVFDNQKVTGHFDCRAFITVSQSYTIRGILIDMMEQFCKETQEPLPQMLHKMDEKSLITEVRQYLLHKSRIIITTRIMHVAEFFKKSFLVHIHTLQLLPPDKAFRFEFDGHCPPELEAMSNEIVQKCKGLPLAIVAIGGLFSTKSKTVFEWQTVSQNLRLELERNAHLTSLTKILSLSYDDLPYYLKPRILYFGIYPEDYSINHKRLTRQWIAEGFVKSEKRRTLEQVAEEYLSELIHRSLVQVSEICVDGKVKICQVHDLLREVIIRKMKDLSFCHHVHEDDQSAIVGVTRRLSIVASSNNVLKSTRNTHIHAIHVFEKGTSLNYVPNNLGILFHLRYINLRNTKVQALPKSIGMLQNLETLDLRETLVHQLPSEINKLIKLCHLLVFHRNYEADYSIFGFTTGALMEKGIKNLTSLQNLYYVEVDHGGIDLIQEMRMLRQLRKLGLRHVKREYGNAICASVAEMKHLESLSITAIAEDEMVDLNFISSPLQLRRLHLKARLEKLPDWIPKLEYLVTIRLCLSKLKDDPLKSLKKLPYLM. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07546 733 Gene3D - 158 281 IPR027417 -
Seca4g07546 733 FunFam Probable disease resistance protein At1g63360 371 460 - -
Seca4g07546 733 Gene3D - 293 370 IPR042197 -
Seca4g07546 733 PRINTS Disease resistance protein signature 547 563 - -
Seca4g07546 733 PRINTS Disease resistance protein signature 319 333 - -
Seca4g07546 733 PRINTS Disease resistance protein signature 176 191 - -
Seca4g07546 733 Gene3D - 371 462 IPR036388 -
Seca4g07546 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 384 IPR027417 -
Seca4g07546 733 SUPERFAMILY L domain-like 504 732 - -
Seca4g07546 733 CDD RX-CC_like 2 131 IPR038005 -
Seca4g07546 733 Gene3D Ribonuclease Inhibitor 484 733 IPR032675 -
Seca4g07546 733 Pfam Rx N-terminal domain 5 84 IPR041118 -
Seca4g07546 733 Gene3D - 4 116 - -
Seca4g07546 733 PANTHER DISEASE RESISTANCE PROTEIN RP 33 729 IPR044974 GO:0006952
Seca4g07546 733 Coils Coil 31 51 - -
Seca4g07546 733 Pfam NB-ARC domain 174 373 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07546 Seca-Chr4 171162727 171165572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07546 176 330 WRKY Transcription Factor Family AT5G45050 27.322 3.39e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07546 K13457 - tpra:123915389 1030.01