Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07525 ATGGCAGAAGCAGCAGTTTCGTTTGCTCTAGAGCAAGTGCTGGAATTCCTGAAAGAAAAATCAACTCTACTGAGAGGCGTGCATAGAGAATTTGCAGATATAAAAGATGAACTTGAAAGCATTGTAGCCTTCCTCAAAGATGCAGACAGAAGAGCTGCAGATGAAGGAAATTCAAAAGATGGAATAAAGACATGGGTGAAGCAACTCAGAGAAGTATCTTTTCGCATAGAAGATGTGATTGCTGAGTACAACTTTTATGTCGCACAGAGGACCCATCATCCTGGTTTCCTCAAAAGGATTTCTCACAAGATCAAAACACTAAAGCCTCTTCATCGAATAGCATCTGAGATTCAAGACATTAAATCCTCAGTTCGTGGAATCAAAGAAAGAAGTGAAAGGTATAATTTTCAGTCTTCAATTGAACACGGATCAATCAGCAGCACTAGAGGGAACCAAAGTGGCAAATGGCATGACCCTCGATTGGCTTCCCTTTTCATTGGAGAAGCTGAAGTTGTGGGATTTGAAAACCCAAGGGATCAATTGGTTGATTGGTTAGTGAATGGAGCAACATCTCGCACTGTGGTTTCAGTTGTAGGAATGGGAGGACTTGGAAAAACAACTCTTGCTAAAACTGTTTTTGACAACCAGCAGCTGAAGAGGAATTTCGATTGTCATGCATTTGTCATAGTTTCTCAATCATATACAGTAGAAGCCTTATTGAGGAACATGATGAAACAGTTTTGCGAAGAAACTAAGGAGCCTCTTCCTCAAGGTATAAACGCAATGGACAAAATGTCACTCATTACTGTGACCAGGCATTACCTGCAGGACAAGAGGTATGTAATCTTCTTTGATGATGTCTGGAAACTAGATTTTTGGGATGAGATTCAACTTGCTACACTTGATAACAACATAGGAAGTAGGATAGTAATCACAACCAGGAACTTGGAAGTGGCAACCTTTTGTAAGAAAGATTCCCATGTTCAAGTGCACAAGTTGAAACCCCTTACTTCAAACAAAGCACGGGAACTCTTCTGCAAGAAGGCATTTCAATTTGACTTCAATGGAAATTGTCCATCAGAGCTAGAAGATATGTCCAATGAAATTGTTAGGAAATGTGAGGGGTTGCCACTTGCGATTGTGGCCATTGGAGGTCTTTTGTCAACCAAAAACAAATCTGTCTTTGAATGGAAAAAATTATGCCAAAATCTTAGTTTTGAGCTAGAGAGAAATCCCCATTTAACTAGTTTAACTAGAATTTTGGCCCTCAGTTATGATGACCTGCCTTACTATTTGAAACCATGTATCTTGTATTTTGGAATATATCCAGAGGACTACTCCATCAGGTGCATGAGATTGGTTAGGCAATGGATAGCTGAAGGCTTTATTATAAATGAGGACCAAAAGGAAAAAGCTTTGGAGGAAGTTGCAGAACAATACTTGACAGAGTTGATCCACAGAAGCTTGGTTCAAGTCTCCAAAGTTGACTATGATGGGAAAGCTTCAAGTTGCCGAGTCCATGATTTGGTACATCAAATGATAATTAGAAAAATGAAAGACTTGAGCTTCTGTCATATTGTTCATGAAGAAGATCAACCAACCCCTGATGTATCTGCTCGACGCTTAGCCATTGCAACTAATTCTGGTGATGTGCTTAGAAGCATTCGACAACACTCACACATCCGGTCCATGTACATGTTTGAAGCAAGTGGATTGCCAGATCACTTCTTGAGTTGGTTCATTACAAAATCTAAGCTTTTGAAAGTGTTGGATTTGGAAGGTACATCATTGAATTATGTTCCTAATGATTTGGGGAATATTTTTCACTTGAGGTACTTGAGCTTAAGAAAAACAAATATTAAGTGCATCCCAAAATCCATTGGTAGACTGCAAAACCTAGAAACCTTAGATCTGAAAGAAACACAAGTGCATGAATTGCCAAGTGAGATAAACAAGCTCAAAAAGTTACGCCATCTTCTAGTTTACTATAGAGAAAGGATTTTTAGTACTAATATTCATGGTGAAACTGGTGTGCGGTTGCAGGGAAGTATTGGAAATTTGACATTCCTACAAAAGCTTTATCATGTGGAGGCAGACCATGGTGGACCAAAGCTAATAATTGAGCTGAAAAAGTTGAGGCAATTAAGGAAGTTGGGCTTAAAAAAAGTGAGGAGAGAATTTGGAAACACTCTATGTGACTCAATACAAGAGATGAACTGCCTTGAATTTCTTTCTGTTAGTGCAATAAGTGAAGATGAAATCATAGATTTGCAATTTATTTCATCTCTCCCTCAACTTCAAAAGCTTCATTTGTTTGGTCGCTTAGAAAAGTTGCCAGAATGGGTTTCAAGACTCGAGTGTCTTGTTAGGTTGTCAATTCGTTTTTCCAAGCTGAAGGATGATCCACTGAAGTCACTTAAAGACCTGCCAAATTTGTTGCGTCTCTCAATTTCAGGTGAAGCATATGTTGGTGAAACGTTGCATTTCCAACTTGGATTTCAGAAATTGAAGAGACTGTATGTTATGAACTTGAAGAAGCTTAATTCAATTGTTATAGAGAGTGGAGCTTTACCTGCTCTTCAACAAACTCAACTGATGCGGTTGCCCCAACTAAAGGAGATGCCCTCTAGCTTCCACCTGCTACAAAGCCTTGAATCTTTATATTTGACTGATATGCCACATGAATTCAACCAAAGCATTGATCCAAATAATGGAGCCAAGTATTGGGTCATCAAACATGTGCAAATGGTGTCAATTAGAGAGAAGGTTGATCCAGATTCTTTTGATTACAACTATCGCACTATTCGCCATCCGAGGGATATATGA 2826 0.39 MAEAAVSFALEQVLEFLKEKSTLLRGVHREFADIKDELESIVAFLKDADRRAADEGNSKDGIKTWVKQLREVSFRIEDVIAEYNFYVAQRTHHPGFLKRISHKIKTLKPLHRIASEIQDIKSSVRGIKERSERYNFQSSIEHGSISSTRGNQSGKWHDPRLASLFIGEAEVVGFENPRDQLVDWLVNGATSRTVVSVVGMGGLGKTTLAKTVFDNQQLKRNFDCHAFVIVSQSYTVEALLRNMMKQFCEETKEPLPQGINAMDKMSLITVTRHYLQDKRYVIFFDDVWKLDFWDEIQLATLDNNIGSRIVITTRNLEVATFCKKDSHVQVHKLKPLTSNKARELFCKKAFQFDFNGNCPSELEDMSNEIVRKCEGLPLAIVAIGGLLSTKNKSVFEWKKLCQNLSFELERNPHLTSLTRILALSYDDLPYYLKPCILYFGIYPEDYSIRCMRLVRQWIAEGFIINEDQKEKALEEVAEQYLTELIHRSLVQVSKVDYDGKASSCRVHDLVHQMIIRKMKDLSFCHIVHEEDQPTPDVSARRLAIATNSGDVLRSIRQHSHIRSMYMFEASGLPDHFLSWFITKSKLLKVLDLEGTSLNYVPNDLGNIFHLRYLSLRKTNIKCIPKSIGRLQNLETLDLKETQVHELPSEINKLKKLRHLLVYYRERIFSTNIHGETGVRLQGSIGNLTFLQKLYHVEADHGGPKLIIELKKLRQLRKLGLKKVRREFGNTLCDSIQEMNCLEFLSVSAISEDEIIDLQFISSLPQLQKLHLFGRLEKLPEWVSRLECLVRLSIRFSKLKDDPLKSLKDLPNLLRLSISGEAYVGETLHFQLGFQKLKRLYVMNLKKLNSIVIESGALPALQQTQLMRLPQLKEMPSSFHLLQSLESLYLTDMPHEFNQSIDPNNGAKYWVIKHVQMVSIREKVDPDSFDYNYRTIRHPRDI. 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07525 941 FunFam Probable disease resistance protein At1g61300 158 327 - -
Seca4g07525 941 Gene3D - 425 518 IPR036388 -
Seca4g07525 941 Pfam Rx N-terminal domain 5 97 IPR041118 -
Seca4g07525 941 CDD RX-CC_like 2 129 IPR038005 -
Seca4g07525 941 Gene3D - 4 114 - -
Seca4g07525 941 PANTHER DISEASE RESISTANCE PROTEIN RP 33 857 IPR044974 GO:0006952
Seca4g07525 941 Pfam NB-ARC domain 177 427 IPR002182 GO:0043531
Seca4g07525 941 Gene3D - 336 424 IPR042197 -
Seca4g07525 941 Gene3D Ribonuclease Inhibitor 546 915 IPR032675 -
Seca4g07525 941 PRINTS Disease resistance protein signature 274 288 - -
Seca4g07525 941 PRINTS Disease resistance protein signature 194 209 - -
Seca4g07525 941 PRINTS Disease resistance protein signature 373 387 - -
Seca4g07525 941 PRINTS Disease resistance protein signature 628 644 - -
Seca4g07525 941 FunFam Probable disease resistance protein At1g63360 425 516 - -
Seca4g07525 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 439 IPR027417 -
Seca4g07525 941 SUPERFAMILY L domain-like 505 917 - -
Seca4g07525 941 Gene3D - 163 330 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07525 Seca-Chr4 170509902 170513152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07525 195 392 WRKY Transcription Factor Family AT5G45050 28.141 3.68e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07525 K13457 - gmx:100801561 1043.88