Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07521 ATGGCAGAAACTGCAGTTTCGTTTGCCCTGGTGCAATTGCTCGAGCTCCTGAAAGAAAAGGGAACTCTACTGAGAGGTGTGCATAGAGAATTTGCAGATATAAAAGATGAACTTGAAAGCATTGTAGCCTTCCTCAAAGATGCAGATAGAATGGCAGCAGATGAAGGAAATTCAAAAGATGGAATAAAGACATGGGTGAAGCAGCTGAGAGAAGTATCTTTTCGCATAGAAGATGTCATTGCTGAGTACAACTTTTATGTCGCACAGAGGACCCATCATCCTGGCTTCATAGCTTTCCTCCAAAAGATGAAAACACTAAAGCCTCTTCATCGGATAGCATCTGAGATTCAAGACATTAAATCCTCAATTCATGGAATCAAAGAAAGAAGTGAAAGGTATAATTTTCAGTCTTCAATTGAACATGGATCAATCAGCAGCACTAGAGGGAACCAAAGTGGCAAATGGCATGACCCTCGATTGGCTTCTCTTTTCATTGAAGAAGCTCAAGTTGTGGGATTTGAAAACCCAATGGATCAACTTGTTGGTTGGTTGGTGGATGGAGAAGCAGCTCGCACTGTGGTTTCAGTTGTAGGAATGGGAGGACTTGGAAAAACAACTCTTGCCAAAAATGTCTTTGACAACCAGCAGCTGAAGAGGAATTTCGATTGTCATGCATTTGTCATAGTTTCTCAATCATATACAGTTGAAGCCTTATTGAGGAACATGATGAAACAGTTTTGCGAAGAAACTAAGGAGCCTCTTCCTCAAGGTATAAACACAATGGACAAAATGTCACTCATTACTGTGACCAGGCATTACCTGCAGGACAAGAGGTATGTAATCTTCTTTGATGATGTCTGGAAACTAGATTTTTGGGATGAGATCAAACTTGCCACACTTGATAACAACATAGGAAGTAGGATAGTAATCACAACCAGGAACTTGGAAGTGGCAACCTTTTGTAAGAAAGATTCCCATGTTCAAGTGCACAAGTTGAAACCCCTGCCTTCAAACAAAGCATGGGAACTCTTCTGCAAGAAGGCGTTTCAGTTTGATTCTAATGGAAATTGTCCATCAGAGCTGGAAGATATGTCTAAAGAAATTGTTAAAAAATGCCAGGGACTACCACTTGCGATTGTGGCCATTGGAGGTCTTTTGTCAACCAAAGACAAATCTGTCTTTGAATGGAAAAAAATATGCCAAAACCTTAGTTTTGAGCTAGAGAGAAATCCCCATTTAGCTAGTTTAACTAGAATTTTAGCCCTCAGTTATGATGACTTGCCCTACTATTTGAAATCATGTATCTTGTATTTTGGAATATACCCAGAGGACTACTCCATTAGCAGTATGAGATTGATTAGGCAATGGATAGCTGAGGGGTTTATTAAACATCAAGAGGGAAAACCTTTGGAGGAAGTTGCAGAAGAATATTTGACAGAGTTGATCCACCGAAGCTTGGTTCAGGTCTCCCGTGTTCATTATGATGGGAAAGCTGCAAGCTGTCAAATCCATGATTTGTTACGGGAAATGATCATTGGAAAGATTAAGGATTTAAGTTTCTGTCATGTTGTGCATGAAGATGATCAACAGATATCTGATGTGATGATTAGACGCTTGGCCATAGCATCTAGTGATTCTAGTTCCAGCAGCGATGTGCTGAGCAGAATTGAACACTCCTCCATGCGGTCACTCTTCATTTTCAATGCTTCAGAATTGCCCAAGAACTATGTGAGCAGGTTCTTTGCAAAATCTAAGCTTTTGAAAGTATTGGACTTGCAAGGTGCTTGGTTGGACTATGTTCCTGATGATTTCGGAAATATTTTTCACTTGAAGTACTTGAGCTTAAGATATACAAATGTTAAGAGTCTTCCTAAGTCCATTGGTAAATTACAGAACCTAGAGACATTGGACTTAAAGGAAACACAAGTGCGTGCCTTGCCAAGTGAGATAAACAAGCTTACAAAGTTGCGCCATCTTTTAGTTTACTACAGAAAATCATTTACCAGTGTTGATGGTGAAACTGGGGCGCGAATGATGGGAGTTATTGGAGGAATGACAGTTTTGCAAAAGCTTTATCATGTGGATGCTGACCATGGTGGATTGAAACTAATAATAGAGCTAAGAAAGTTGAGGCAATTGAGGAAGTTGGGCTTAAAGAATGTAAGGAGAGAATATGGGAAAGCTCTTTACAATGGAGCTTTGCCTCACCTTAAACTAATTGAATTAGTGCATATCCCCAAACTAAAGGAGATGCCCTCTGATATTCATCTACTAAAGAACCTTGAAACTATGTTTTTGACTGATATGCCATATGAATTCAACCAAAGCATTGATCCAAATGGTGGACCCAAGTACTGGGTCATCAAACATGTGCAAATTGTATCAATTAGGGAGAATGTTGCTACAAGTTCTATGGACTCCAGATATCGCACCATTCGCTTCTCAATATGGATGGAACTTGGAAGTTTCCGATTGTCAATATGCATGTTGCTGTTCAATACAAGAGCATTTATTGTTTCTTCATTCTTCCTTGGTACTTTTCAATCACCAAATAGAAGTAAAACTCTTGGGCCATGCTGCTGCAATCCATATGAACCTCCTTGTGAATTTCTTTGA 2616 0.3964 MAETAVSFALVQLLELLKEKGTLLRGVHREFADIKDELESIVAFLKDADRMAADEGNSKDGIKTWVKQLREVSFRIEDVIAEYNFYVAQRTHHPGFIAFLQKMKTLKPLHRIASEIQDIKSSIHGIKERSERYNFQSSIEHGSISSTRGNQSGKWHDPRLASLFIEEAQVVGFENPMDQLVGWLVDGEAARTVVSVVGMGGLGKTTLAKNVFDNQQLKRNFDCHAFVIVSQSYTVEALLRNMMKQFCEETKEPLPQGINTMDKMSLITVTRHYLQDKRYVIFFDDVWKLDFWDEIKLATLDNNIGSRIVITTRNLEVATFCKKDSHVQVHKLKPLPSNKAWELFCKKAFQFDSNGNCPSELEDMSKEIVKKCQGLPLAIVAIGGLLSTKDKSVFEWKKICQNLSFELERNPHLASLTRILALSYDDLPYYLKSCILYFGIYPEDYSISSMRLIRQWIAEGFIKHQEGKPLEEVAEEYLTELIHRSLVQVSRVHYDGKAASCQIHDLLREMIIGKIKDLSFCHVVHEDDQQISDVMIRRLAIASSDSSSSSDVLSRIEHSSMRSLFIFNASELPKNYVSRFFAKSKLLKVLDLQGAWLDYVPDDFGNIFHLKYLSLRYTNVKSLPKSIGKLQNLETLDLKETQVRALPSEINKLTKLRHLLVYYRKSFTSVDGETGARMMGVIGGMTVLQKLYHVDADHGGLKLIIELRKLRQLRKLGLKNVRREYGKALYNGALPHLKLIELVHIPKLKEMPSDIHLLKNLETMFLTDMPYEFNQSIDPNGGPKYWVIKHVQIVSIRENVATSSMDSRYRTIRFSIWMELGSFRLSICMLLFNTRAFIVSSFFLGTFQSPNRSKTLGPCCCNPYEPPCEFL. 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07521 871 CDD RX-CC_like 2 128 IPR038005 -
Seca4g07521 871 Gene3D - 424 514 IPR036388 -
Seca4g07521 871 SUPERFAMILY L domain-like 503 769 - -
Seca4g07521 871 Gene3D Ribonuclease Inhibitor 562 799 IPR032675 -
Seca4g07521 871 Pfam NB-ARC domain 174 426 IPR002182 GO:0043531
Seca4g07521 871 FunFam Probable disease resistance protein At1g61300 156 326 - -
Seca4g07521 871 Gene3D - 160 329 IPR027417 -
Seca4g07521 871 FunFam Probable disease resistance protein At5g66910 334 423 - -
Seca4g07521 871 PANTHER DISEASE RESISTANCE PROTEIN RP 33 767 IPR044974 GO:0006952
Seca4g07521 871 Pfam Rx N-terminal domain 5 97 IPR041118 -
Seca4g07521 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 438 IPR027417 -
Seca4g07521 871 Gene3D - 335 423 IPR042197 -
Seca4g07521 871 Gene3D - 4 113 - -
Seca4g07521 871 PRINTS Disease resistance protein signature 628 644 - -
Seca4g07521 871 PRINTS Disease resistance protein signature 273 287 - -
Seca4g07521 871 PRINTS Disease resistance protein signature 193 208 - -
Seca4g07521 871 PRINTS Disease resistance protein signature 372 386 - -
Seca4g07521 871 FunFam Probable disease resistance protein At1g63360 424 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07521 Seca-Chr4 170371364 170374712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07521 194 391 WRKY Transcription Factor Family AT5G45050 28.141 2.33e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07521 K13457 - vun:114181831 822.002