Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07503 ATGCTTGCTTCCTACGCTGCGTCCGTATCAAGGCCCAAGGCCGCCGCTGACCGCGAAATAACTATTCATGATACTATCTCAGGCCGGCCCGTGCCGGTGGTCATGGGCCTGGAAAAGCCCATGATTGAGGCCTACCCGAAGTTGGTTGTTGGGGAGAGCCGGCGATTGCCCAAGCCCAACGAAGGCCCGTGTGCCATCTGCTTGTCAGAGTATCTTCCGAAAGAGACGATACGGTGCGTTCCGGACTGCCACCATTGCTTCCACGCCGAATGTGTGGACGAGTGGCTCCAGATGAGTGCCACGTGTCCCTTGTGTCGGAACTCTCCCGCTCCATCGCCGTCATCTACGCCGGTGGCCACGCCTCTGTCTGAACTGGTTCCTCTGGCTTTTCACGCCAGGTGA 402 0.5896 MLASYAASVSRPKAAADREITIHDTISGRPVPVVMGLEKPMIEAYPKLVVGESRRLPKPNEGPCAICLSEYLPKETIRCVPDCHHCFHAECVDEWLQMSATCPLCRNSPAPSPSSTPVATPLSELVPLAFHAR. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07503 133 CDD RING-H2_EL5-like 64 106 - -
Seca4g07503 133 Pfam Ring finger domain 64 106 IPR001841 -
Seca4g07503 133 SMART ring_2 64 105 IPR001841 -
Seca4g07503 133 ProSiteProfiles Zinc finger RING-type profile. 64 106 IPR001841 -
Seca4g07503 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 111 IPR013083 -
Seca4g07503 133 SUPERFAMILY RING/U-box 57 114 - -
Seca4g07503 133 PANTHER RING-H2 FINGER PROTEIN ATL67 32 131 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07503 Seca-Chr4 169400844 169401265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07503 1 133 C3H Transcription Factor Family AT5G07040 55.147 3.43e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07503 - - lja:Lj3g3v0787250.1 195.667