Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07501 ATGGCATCCAGCTCAATGTCACTCACTGGCTCATGGAGTGCTGAGGACGATAAGGCCTTTGAAAATGCTATAATTGTTTATGACGAGAACACCCCTGACCGTTGGTACAAAATTGCTAAAGCTGTTGGTGGGAAGACACCAGAGGAAGTAAAAAGGCACTATGAGATCCTCGTCATGGATATTGAGAACATTCAATCAGGGAAAGATGAGAAACTTGAAGCTCCAGTGACCAGTTGA 237 0.443 MASSSMSLTGSWSAEDDKAFENAIIVYDENTPDRWYKIAKAVGGKTPEEVKRHYEILVMDIENIQSGKDEKLEAPVTS. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07501 78 CDD SANT 11 54 IPR001005 -
Seca4g07501 78 SUPERFAMILY Homeodomain-like 5 58 IPR009057 -
Seca4g07501 78 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Seca4g07501 78 SMART sant 8 60 IPR001005 -
Seca4g07501 78 Gene3D - 3 70 - -
Seca4g07501 78 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Seca4g07501 78 FunFam Transcription factor SRM1 4 70 - -
Seca4g07501 78 Pfam Myb-like DNA-binding domain 9 54 IPR001005 -
Seca4g07501 78 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 68 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07501 Seca-Chr4 169316105 169316912 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g07501 Myb_DNA-binding 8.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07501 - - gmx:100818368 108.612