Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07499 ATGCATGCACATGTTAGGAAAGCTAATGATATCCGGCTTGCAACAAACAAATTTGCAGTTGAAAACTTGATAGGTAAAGGAGGCTTTGGTTCTGTTTATAAGGGTGTTTTCAGCATCAACACTGGTGAAACCACTACCCTTGCTGTTAAGGTCCTAGACTTAGAACAGAGCAAGGCTTCTAAGAGTTTTAATGCTGAATGTGAAGCGTTAAGAAATGTCAGGCACCAGAACCTAGTGAAGGTTATCACTTCTTGCTGCAGTGTTGATTATAAGGAAGATGACTTTAAGGCCATTGTGATGCAATTCATGCCCAATGGTAATTTGGACATGAGTTTATACCTCATTGATGAAGAGTCAGGATCCTCTCTAACCTTGCTGCAAAGATTAAACATTGACATTGATGTTGCTTCTGCCATGGATTACTTGCATAATGACAGTGACCCACCAATAGTCCATTGTGATTTGAAATCTGTCAATGTTCTGCTAGATGAAAATATGGTTGCACATGTTGCAGATTTTGGACTGGCAAGGTTTCTTTCTCAAAATCCATCAGAACAACAAAGTAGCACTCTAGGACTGAAATGA 585 0.3949 MHAHVRKANDIRLATNKFAVENLIGKGGFGSVYKGVFSINTGETTTLAVKVLDLEQSKASKSFNAECEALRNVRHQNLVKVITSCCSVDYKEDDFKAIVMQFMPNGNLDMSLYLIDEESGSSLTLLQRLNIDIDVASAMDYLHNDSDPPIVHCDLKSVNVLLDENMVAHVADFGLARFLSQNPSEQQSSTLGLK. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07499 194 FunFam Os07g0541700 protein 103 192 - -
Seca4g07499 194 SUPERFAMILY Protein kinase-like (PK-like) 7 185 IPR011009 -
Seca4g07499 194 Gene3D Transferase(Phosphotransferase) domain 1 3 193 - -
Seca4g07499 194 ProSiteProfiles Protein kinase domain profile. 18 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07499 194 PANTHER OS04G0122200 PROTEIN 9 190 - -
Seca4g07499 194 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
Seca4g07499 194 Pfam Protein tyrosine and serine/threonine kinase 20 188 IPR001245 GO:0004672|GO:0006468
Seca4g07499 194 SMART serkin_6 18 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07499 194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07499 Seca-Chr4 169306171 169306755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07499 10 179 Receptor kinase-like Gene Family AT3G47570 51.724 4.85e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca4g07499 PK_Tyr_Ser-Thr 4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07499 - - mtr:11428205 298.901