Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07489 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAATTTCTAAGGAGAAAGTGTCAACCAGAGTGTGTGTTTGCACCTTATTTCCCACCTGATCAGCCCCATAAGTTTGCAAATGTTCACAGAATCTTTGGTGCTAGCAATGTCTCCAAACTTCTCAATGACTTGCACCCTTATCAACGTGAAGATGCTGTAAATTCCCTTGCCTATGAAGCAGAGATGCGCCTCCGCGACCCTGTCAATGGCTGTGTAGGAATCATCTCACTCCTTCACCATCAGCTCCGCCAGCTACAAATGGACCTTTTCTGTGCCAAATCTGAGCTTTCAAGAATCCAAAACATTGGCATGGTCAATACCGGCCATGGCCTCATTGCTGCCACGGCCACCACAGCCAACCAACACACTATGATAAACATCAGTAGTGGTGGCCATCACCATCAACATCAACATCAGTTTTTTCCTAGGGATCAATATCAGCAACAGCAGCATGTAGTTAGGAACTTTGACTCAGGGAACTACTATGAGGCTAATATATTGGCTATGAACATATCTACAAGTTTTGGGCAACTAAATCAGATTCAGCAGCCTAGTGCTGCTGCTGCTGGTGATGACCACCACACTGTCCATCCCTCTTAG 633 0.4566 MASSNSPCAACKFLRRKCQPECVFAPYFPPDQPHKFANVHRIFGASNVSKLLNDLHPYQREDAVNSLAYEAEMRLRDPVNGCVGIISLLHHQLRQLQMDLFCAKSELSRIQNIGMVNTGHGLIAATATTANQHTMINISSGGHHHQHQHQFFPRDQYQQQQHVVRNFDSGNYYEANILAMNISTSFGQLNQIQQPSAAAAGDDHHTVHPS. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07489 210 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca4g07489 210 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Seca4g07489 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07489 Seca-Chr4 169114787 169115419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07489 2 210 AS2 family AT1G65620 60.287 5.37e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g07489 LOB 7.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07489 - - gmx:100819502 291.582