Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07483 ATGGCTACTGCAAGGACAGTGAAGGATGTTTCTCCCCATGAGTTCGTCAAGGCTTACTCTGCTCACCTCAAGCGATCTGGCAAGCTAAATTCATTTTCCTTATTCTTTTTTGGTTCTACACAGATGGAGCTTCCTGAATGGACAGACATTGTGAAGACTGCAAGATTTAAGGAGTTGGCTCCTTATGATCCAGATTGGTACTATGTTAGAGCTGCTTCCATGGCAAGAAAGATCTACTTGAGAGGAGGACTTGGTGTTGGTGCCTTTCAGAGAATTTATGGTGGGAGCAAGAGGAATGGTAGTCGCCCACCTCATTTCTGTAAGAGCAGTGGTGCTATTGCTCGTCACATTCTCCAACAGTTGCAGAACATGAGCATCATTGAACTGGACACCAAGGGTGGCAGGAGAATCACTTCCAGTGGTCGTCGGGATCTTGACCAAGTGGCTGGACGGATTGTGGTTGCACCTTGA 471 0.4692 MATARTVKDVSPHEFVKAYSAHLKRSGKLNSFSLFFFGSTQMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIIELDTKGGRRITSSGRRDLDQVAGRIVVAP. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07483 156 Pfam Ribosomal protein S19e 6 153 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca4g07483 156 PANTHER 40S RIBOSOMAL PROTEIN S19 2 152 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca4g07483 156 ProSitePatterns Ribosomal protein S19e signature. 103 122 IPR018277 GO:0003735|GO:0005840|GO:0006412
Seca4g07483 156 SMART Ribosomal_S19e_2 6 155 IPR001266 GO:0003735|GO:0005840|GO:0006412
Seca4g07483 156 FunFam 40S ribosomal protein S19 2 156 - -
Seca4g07483 156 SUPERFAMILY "Winged helix" DNA-binding domain 6 154 IPR036390 -
Seca4g07483 156 Gene3D - 1 155 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07483 Seca-Chr4 168817283 168819214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07483 1 156 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 78.205 2.21e-90 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07483 K02966 - gmx:100305587 278.87