Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07481 ATGGGCAGGGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGACCATGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAGTACATAGAGAAACATGGGACTGAAGGGAACTGGATAGCCCTCCCACAGAAAGCTGCTTTCCCTATAAATATCAATATGTTCAGTTCAGGTGCATGTGATCTTTTACAGCTTAAAGTCAATTTTGAAGCCCAACTCATGAGGAATGGAACCTTGAATGGTGTTGTTAAAGATGTGAAAGCTCTGTAA 267 0.4157 MGRAPCCDKANVKKGPWSPEEDEKLKEYIEKHGTEGNWIALPQKAAFPININMFSSGACDLLQLKVNFEAQLMRNGTLNGVVKDVKAL. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07481 88 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g07481 88 CDD SANT 16 40 IPR001005 -
Seca4g07481 88 Gene3D - 11 74 - -
Seca4g07481 88 PANTHER OS09G0431300 PROTEIN 1 45 - -
Seca4g07481 88 Pfam Myb-like DNA-binding domain 14 41 IPR001005 -
Seca4g07481 88 ProSiteProfiles Myb-like domain profile. 9 48 IPR001005 -
Seca4g07481 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 34 IPR017930 -
Seca4g07481 88 SUPERFAMILY Homeodomain-like 9 44 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07481 Seca-Chr4 168784739 168786392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07481 1 47 MYB Transcription Factor Family AT2G36890 82.979 2.30e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g07481 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07481 K09422 - gmx:100820139 99.3673