Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07477 ATGAATGATGGCAATTTACCACCAGTTCTTGGGCTTAGGAACTATATTTCTGGGTGCGGTATGCCTTTTGAGAAGCAACTGACAAAAAGCGATTTGAGGGTAGATCAAAATAGATTGTTGCTGAACAAAAATCATGTGGAAACATCTTTCTTACCCTTGTTGAGAGAAGATGAAAGCATTAAGGAAGGGATAGAAGTCATTGCCTATAATATGGATGGCAATATGTTTACCATGACATTCAAGATTTGGGCAGATAAGTACTATGTGCTTATGGGAGGGTGGAAAGCTTTCTTCCAAGCACACACATTACAAATTCAAGATTATGTCAAAGTGTGGATGTTTCGTCATTCGGAAACCAAAAAGCTATGTTTTGCTCTTAGTATTAGAAAGGTTTAA 396 0.3737 MNDGNLPPVLGLRNYISGCGMPFEKQLTKSDLRVDQNRLLLNKNHVETSFLPLLREDESIKEGIEVIAYNMDGNMFTMTFKIWADKYYVLMGGWKAFFQAHTLQIQDYVKVWMFRHSETKKLCFALSIRKV. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07477 131 Pfam B3 DNA binding domain 23 124 IPR003340 GO:0003677
Seca4g07477 131 SUPERFAMILY DNA-binding pseudobarrel domain 23 127 IPR015300 -
Seca4g07477 131 CDD B3_DNA 23 130 IPR003340 GO:0003677
Seca4g07477 131 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 18 127 IPR005508 GO:0003677
Seca4g07477 131 Gene3D - 17 130 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07477 Seca-Chr4 168697399 168697794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07477 22 126 B3 DNA Binding Superfamily AT4G03170 45.794 1.60e-25 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g07477 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07477 - - tpra:123915381 166.392