Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07462 ATGGAGCTTGATTTGAATCAGGAGCCTCTGGACCCAACCCGTAGTTCAGTAATTGAACTTGATTCTATATTGAATGAACTAGAATCTGCCCAGGCACATATACAGGACCGTATTAGACACCTTGAAGCAGTAACTTCCAGAGCTAGGCAGCGTCACAGGTGGCCACCGGTTCACTCTCCGATTCAGATAACCAACTTTACTGGAGAAGCCGCGGCAAATGATGCTCAAGGTGAAGAAAGGGAGCACCAGGAAGATGGGGAAGGGATAGTTGAAAGTGGGAAAGAGGGCAAAAGGGAAGGTGGTGCCTGTTTAATAGCTAGAGCTTTAGGGATGAAAGAAACATATGCTACTATGCCAGGGGTGAGAACTGGAAATTTTTTTGATTGTAATATATGCTTGGAAATGGCAAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGTCATGCTTCTATCAGTTGTCATATACTTATTCAAATGTAAAGGAATGCCCTGTTTGTCATGGAGAGGTAACTGAAAAGGGCATTATTCCAATTTATGGCAATGCAAGGGCAAGTGATGATTGTCAGTTGGATTTGAAAGAAACTGGTTTGAGAGTTCCTCCTCGACCTCGGGCACCCAGAATTGAGTGTGTTAGGCAGCAGCTAATAAGCCAAGGAGCATCTTCTTCTGTAGTTGAAAACATTCGGCGGTTTAGTAACCTTATTGGTGGACTAGGAGAGCGAGTTCAATCAGAAAGCTCCAATGCTGCAACTGTTAGAAATAATAGTTTTCTCATTCATTCTCATCCACAGTCAGACAACCATCAACATACTGGTTCTCCTCCAATTTCAAGGTTTTTAGAGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCAGAGAGATTAGTTCAGGACCTTGAATCATATATCCATGACCGCCACTTAGGAGGAAGCAGGCAGTTAAATCCCCATGATGTTATTAGAAATTCAACTTTTAGTGTTGCCGGGACAAGCTGGTCAGCGAGTCTTACTACAAATGTTGCTGCAACCAATTCTGCAGCTGCAGCTTCTTTGTCTCCGATAAGTAGGAATGTTAACACAGTTGCTGTTACAGGCTCAGAAGCCCAGACAACAGATAGTAATGTACAGATTAGTCCAATAGACCCTTCTTCATCTTACAGTAGAAGAACTAATATTTCAAGACAAGATTCAAATGGGCGAAGAAGAAGATTGAGATGA 1254 0.425 MELDLNQEPLDPTRSSVIELDSILNELESAQAHIQDRIRHLEAVTSRARQRHRWPPVHSPIQITNFTGEAAANDAQGEEREHQEDGEGIVESGKEGKREGGACLIARALGMKETYATMPGVRTGNFFDCNICLEMARDPVLTCCGHLFCWSCFYQLSYTYSNVKECPVCHGEVTEKGIIPIYGNARASDDCQLDLKETGLRVPPRPRAPRIECVRQQLISQGASSSVVENIRRFSNLIGGLGERVQSESSNAATVRNNSFLIHSHPQSDNHQHTGSPPISRFLEQGAASFSSLSSALNSAMDSAERLVQDLESYIHDRHLGGSRQLNPHDVIRNSTFSVAGTSWSASLTTNVAATNSAAAASLSPISRNVNTVAVTGSEAQTTDSNVQISPIDPSSSYSRRTNISRQDSNGRRRRLR. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07462 417 Pfam zinc-RING finger domain 129 170 IPR001841 -
Seca4g07462 417 SMART ring_2 129 169 IPR001841 -
Seca4g07462 417 SUPERFAMILY RING/U-box 124 178 - -
Seca4g07462 417 MobiDBLite consensus disorder prediction 74 95 - -
Seca4g07462 417 MobiDBLite consensus disorder prediction 377 405 - -
Seca4g07462 417 MobiDBLite consensus disorder prediction 71 95 - -
Seca4g07462 417 MobiDBLite consensus disorder prediction 377 417 - -
Seca4g07462 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 215 IPR013083 -
Seca4g07462 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 83 287 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca4g07462 417 Coils Coil 24 44 - -
Seca4g07462 417 ProSiteProfiles Zinc finger RING-type profile. 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07462 Seca-Chr4 167996287 167998318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07462 80 403 C3H Transcription Factor Family AT3G58030 32.551 1.41e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07462 - - cam:101488454 468.003