Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07455 ATGCCACTCATGGCTTTCAACGCTAAGCAAGAGGAAAAAGAACCGTACATAGTAAAAGAAGAAGAGGAGGAAGACGATGATGACGAAGAAGAAGAACAAGACTGGGGCGACTGGGAAGGAGAGGAGGGAGAGCCAGAATCGGAATTCCTCTGTCTGTTCTGTGATTCCAACTACGGTTCATGCAGTTCCTTGTTCGACCATTGTGCTTCTATTCACCAATTTGATTTTCACGCCGTTAGGAGAGCTCTTAACTTGGATTTTTATGCTTCCTTCAAGCTCATTAACTACATCCGCTCTCAGGTTGCAGAGAGCAGATGTTGGAGCTGTGGATTATCGTGTCAGTCCAACCATGACTTGCAGAATCATTTGCATGATGTAATTGACTTCAATGATATTAAGCCTCTGTGGGATGATGATAGATATCTAAAGCCTTTCATGCAAGATGATTCACTGTTGTACAGTTTTGGTGATTGCGAAGAAGGTGAAGATGAACAAATTTCACTGGTTGATGAAGATCTTATTAGGGATTTGAAGAGCACTGAAGAAATATACGGCAACGATCAAAAAGCTGTGGAAAATTTGGTTGTTAATGATGATGTACATGATGTTTGTACAAGAAAGGAGACTGCTTCTGTTTTGGGTGATCAGCCGAACTGGTCTAGTTCTTCAGATAAGGAACTCATTAATGGAAAAGGCTCAAGAGGATATGTTTCATCAAATGATAAGGATCCAGAAGAAGGGCACTTGATGGCTAATTCTCAAAGTCACATTGCAAAGCATATTAAGAAGGTTAATGAAAATTATTTTGGGTCTTACAGTTCATTTGGCATCCATCGAGAGATGTTAAGCGATAAGGTGAGAATGGATGCTTATGGCCAAGCAATCTTGAAGAATCCCTCTCTTCTAAATGGTGCTGTTGTTATGGATGTAGGTTGTGGAACTGGCATCCTCAGGTGA 957 0.4096 MPLMAFNAKQEEKEPYIVKEEEEEDDDDEEEEQDWGDWEGEEGEPESEFLCLFCDSNYGSCSSLFDHCASIHQFDFHAVRRALNLDFYASFKLINYIRSQVAESRCWSCGLSCQSNHDLQNHLHDVIDFNDIKPLWDDDRYLKPFMQDDSLLYSFGDCEEGEDEQISLVDEDLIRDLKSTEEIYGNDQKAVENLVVNDDVHDVCTRKETASVLGDQPNWSSSSDKELINGKGSRGYVSSNDKDPEEGHLMANSQSHIAKHIKKVNENYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILR. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07455 318 ProSitePatterns Zinc finger C2H2 type domain signature. 51 72 IPR013087 -
Seca4g07455 318 MobiDBLite consensus disorder prediction 1 42 - -
Seca4g07455 318 MobiDBLite consensus disorder prediction 17 42 - -
Seca4g07455 318 SUPERFAMILY beta-beta-alpha zinc fingers 30 164 IPR036236 -
Seca4g07455 318 PANTHER ZINC FINGER PROTEIN 277 18 183 IPR040048 -
Seca4g07455 318 MobiDBLite consensus disorder prediction 216 248 - -
Seca4g07455 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 271 317 IPR029063 -
Seca4g07455 318 MobiDBLite consensus disorder prediction 216 236 - -
Seca4g07455 318 Gene3D Vaccinia Virus protein VP39 256 318 IPR029063 -
Seca4g07455 318 Pfam C2H2 type zinc-finger (2 copies) 51 125 IPR041661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07455 Seca-Chr4 167827681 167829429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07455 17 317 C2H2 Transcription Factor Family AT3G12270 45.483 1.08e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07455 K11436 - gmx:100781879 408.683