Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07454 ATGGCAGCTGAATTGGTAGGAGGGGCTTTTCTCTCTGCTTTGGTCCAAACTATGTTTGAGAGGATGGCCACTCGTGAGATGCTAGACTTCATTAGAGGAATAAAACATGACAATGGTCCTAACCTGCTACACAAGTTGAAGATAACATTACGGTCTGTTGATACTGTGGTCAACCATGCTGAGGAGAAGCAGACTCAAGATTTGCACATAAGGGAATGGCTGAATGATCTCAAGGATGCCATGTTTCAAGCAGAAGACCTTTTGGATAAGATCAATGCTTCACCTTCAAGGCAGAAAAAACTGGAAGGTGTGTTATGGAGTAGCAGCACAAGCAAGGTATGTTACTCTTCACTTGGTAGTTTTAGTGAAAGGATGGAGAACATTATAGAAGAATTAGAAACTCTTGTGCAACAAAAGGATGTCTTGGGTTTGAGGGAAGATGTCCATCAGATACCATCTAGAAAACTTCAAACAACTTCTTTAGCAGGAAAATCTTCTATCTATGGAAGAAATGTTGATAAGAACAATGTTATCAATCTTTTGCTTTCAGTGTCAGGTTATGGTAATGATAAGATATGTGTCTTACCCATAGTTGGTATGGGAGGAGTTGGGAAGACCACTCTTGCTCAACTTGTATACAATGATGAAAAAGTAAAGCAACATTTTGACATCAAAGCATGGGTTTGTGTTAACCAAGAATTTGATGTCTTCAAATTGACCAAGACCATTCTGGAAGCAATCCCTTTAACATGTGATGCAATGGATCTTAACTTACAGCAGATTAAGTTGAAAGAGTTCCTTCATAACAAGAGATTTTTAATTGTTTTAGATGATGTTTGGAACGAAAGTTGTGCCATGTGGGAGATTTTAATGCGTCCATTTGAATTTGGAGGTCAAGGAAGTTGTGTCCTAGTAACAACCCGCAATGAAAATGTTGCATCAGCTATGTCAGCTATGCTTACTGTTCCAATTCAAAGTTACCATTTAAAACCACTAGCACATGATGATTGTTGGTTGCTGTTTTCTGAGCATGCATTTGATGGGGGAAGGTTCATAAAAAGTACTGAGCTGGAAGATATTGGCAGAAAGATAGTGAAAAAATGCAGGGGACTGCCATTGGCAGCAAAAGCCCTTGGGGGTCTCTTGCGGTCAAAAGTAGATATAAGAGAATGGGTGAAGGTTCTGGAAAGTAAAATATGGGACTTTCCAAATGATAGGATCAATATTCTTCCAGCTCTCATGTTGAGCTATTACTATCTTCCTTCAACTCTTAAGCGTTGTTTTGCTTATTGCTCCATATTTCCTAGAAGCTACCAATTTAGAAGAAAGGAACTAGTGCGCTTGTGGATGGCAGAAGATCTTCTACCACATCCCAAAAGAAGTGGAAATGTGGAAGAACTTGGTACTGAATACTTTAATGATCTAGCATCAAGATCATTCTTTCTTAATTCAAGTAGGAAACGCTTTATCATGCATGATCTCATTGTTGATTTAGCTGAATTTGTCTCAGGAGAGTTCTCATTCAGATTGGAGGGAGAGAAGAATAGTCATCTGTCAAAAAGAACTCGCCATTTGTCATATTCAAAGCTTCAGTTTGATGATTTGGAGAAAATTACAGCTACATGTCAAAACCTACGGACTTTTCTTCCATCACAAGTTTTGTCATGGCCAAGATGTCTGAACTATGATGCTGTGGGCAGCTTAATATCAAATCATAAAAGTTTAAGGGTCCTTTCTTTCTCACACTGTGGTAATTTGACAGCTTTACCTGAATTCTTCGGTGACTTGATACATTTAAGATATCTAGACCTCAGTTTCACTCCAATCTCCAAGTTACCTGAGTCCACATGTTCTCTGTATAATTTGCAGACTTTGTTGTTGATAAACTGTGTTTATCTTACTGAATTGCCTATCAAAATGGGAAAGCTAACCAACTTAAGGTGCTTGGATATTAGGGGAACAAACTTAAATGAAATGCCACCTCATATGGGTAGTTTGACAAATCTTCAAACCTTAACTGGATTTGTTCTGGGCAGTGGACAAGGGTCAGGCATTGAAGAGCTGAAGAATTTTCCTTCTCTTAAGGGAAAGATCTCTATTTCAAATCTCCAAAATGTCATTGATCCACCTAATGATATGAAGGCTAATTTGTTGGGAAATATGCAACTTAATGAGTTAATGTTGAGTTGGAGCAAAAATGCAGATGATTCAAAAAATGTTAGAAGTGTATTGCATTGGTTGGAGCCTCCTAAGACCTTGGAAAAACTTACCATTAGAAATTATGGTAGCACTTCATTCCCAGCCTGGTTAGGAGATTTTCAGTTCTCAAAGTTAGTATCTGTAGGCCTGTATGATTGTGTAAATTGTCTTTCTTTGCCAACACTGGGGAAATTGCCTTCCTTGAAAGCCCTCTCATTGGTGGGGTTCATGATTGTCACTCATATTGATGGTGTGTTTTACAACAATTTTTCTATGGAAGCTAAGCGATCTCAGAGACACAATACTGTACCATTTAGGTGCCTTGAGACTTTGCGTTTTGAGAACATGCCACAATGGAAAGAATGGCTTCCTTTTGAGGAGGAAGGGAAGGAAGATGAAGATGGGGCATTTCCTTGTCTTAAACAACTTTATATAAAAAATTGCCCTAAACTAAAAGGCTTGAACTTGATCCAAAAACTACCTGCTCTAGAAAAGATTGTGATTACAAATTGTCAACAGCTTGTGGTTGCAGTTCCCCCAACAATCTGTGAATTGCAATTAGAATGTTGTGAGAAGGTTTCAATCCAAAGGCCACTGCCTCAATTATTGAACCTGACAATCAGAAGCTATAATGCAGTAGAGTCACTATTTGAGGGAATAGACAACAGAAGTTGTTGCATTGAAAAATTGAGCATCTCAAGTTGTCCTCTCATAAGGCAGCTCCCTAGTAATGGAATTGCAAACACATTAAAATCACTCAACATTACTAACTGTGAGAAAGTTGAGTTTCCTATGAACCAATGCTTTGCATATCTTGAGAGCTTATGCATCAAATGGAGCTGTAATTCCCTGGGGTCTTTCATAATGGACTTGTTTCCAAAGATGGTCCACCTTGAAATACAAGGATGTCAGGCTCTAGAGTCTCTTCTAGTTTCCAGGGTGCATGTGCAACATCTACAATCTCTGAATTCCTTAAAGATCTGTGATTGTCCTAATTTTGTATCTTTCCCTGAAGGTGGACTCCCTGCTCCAAAACTGACAAATTTACATTTGGAAAAATGTAAGAAATTGAAGTTCCTTCCTTGGCAGATGAAGGAGCTGCTCCCATCCCTCATGACATTGAACTTAAAAGAGTGTCCAGAACTTGAATCATTTTCAGAGGGAGGCTTGCCAGATAGTCTGAATGTACTTGAGATCTTTCATTGTTCTAAACTGTTTACCAACAGAAAAAACTGGGATTTGCAAAGACTTCTCTCTCTTCAAAGCTTTGCTATTGCAGATACATGTCAAGATGGGGAATCCTTTCCTGAAAGAGAGTTGCTGCCATCCACTCTAACATCCTTTCATATCCTTGCACTTTGGAATTTGAAGTATCTAGATGGGGACAGCCTTCAGCAATTGGCATCTCTAGAGACTCTGGGGATTGCATGCTGCCCAAAACTTCAGTGTATGCCGGCAAAGCTTCCTTCTTCAATTTCTGCTCTTCATATCATGAAATGTCCAAGACTTGAAGAAAAATGTAAAGGAAAGGAATCTGAAGATTGGTCCAAAATTGCTCACATTCCCATGATACGGATCAATAAGAAATTGGTCCAATAG 3798 0.3886 MAAELVGGAFLSALVQTMFERMATREMLDFIRGIKHDNGPNLLHKLKITLRSVDTVVNHAEEKQTQDLHIREWLNDLKDAMFQAEDLLDKINASPSRQKKLEGVLWSSSTSKVCYSSLGSFSERMENIIEELETLVQQKDVLGLREDVHQIPSRKLQTTSLAGKSSIYGRNVDKNNVINLLLSVSGYGNDKICVLPIVGMGGVGKTTLAQLVYNDEKVKQHFDIKAWVCVNQEFDVFKLTKTILEAIPLTCDAMDLNLQQIKLKEFLHNKRFLIVLDDVWNESCAMWEILMRPFEFGGQGSCVLVTTRNENVASAMSAMLTVPIQSYHLKPLAHDDCWLLFSEHAFDGGRFIKSTELEDIGRKIVKKCRGLPLAAKALGGLLRSKVDIREWVKVLESKIWDFPNDRINILPALMLSYYYLPSTLKRCFAYCSIFPRSYQFRRKELVRLWMAEDLLPHPKRSGNVEELGTEYFNDLASRSFFLNSSRKRFIMHDLIVDLAEFVSGEFSFRLEGEKNSHLSKRTRHLSYSKLQFDDLEKITATCQNLRTFLPSQVLSWPRCLNYDAVGSLISNHKSLRVLSFSHCGNLTALPEFFGDLIHLRYLDLSFTPISKLPESTCSLYNLQTLLLINCVYLTELPIKMGKLTNLRCLDIRGTNLNEMPPHMGSLTNLQTLTGFVLGSGQGSGIEELKNFPSLKGKISISNLQNVIDPPNDMKANLLGNMQLNELMLSWSKNADDSKNVRSVLHWLEPPKTLEKLTIRNYGSTSFPAWLGDFQFSKLVSVGLYDCVNCLSLPTLGKLPSLKALSLVGFMIVTHIDGVFYNNFSMEAKRSQRHNTVPFRCLETLRFENMPQWKEWLPFEEEGKEDEDGAFPCLKQLYIKNCPKLKGLNLIQKLPALEKIVITNCQQLVVAVPPTICELQLECCEKVSIQRPLPQLLNLTIRSYNAVESLFEGIDNRSCCIEKLSISSCPLIRQLPSNGIANTLKSLNITNCEKVEFPMNQCFAYLESLCIKWSCNSLGSFIMDLFPKMVHLEIQGCQALESLLVSRVHVQHLQSLNSLKICDCPNFVSFPEGGLPAPKLTNLHLEKCKKLKFLPWQMKELLPSLMTLNLKECPELESFSEGGLPDSLNVLEIFHCSKLFTNRKNWDLQRLLSLQSFAIADTCQDGESFPERELLPSTLTSFHILALWNLKYLDGDSLQQLASLETLGIACCPKLQCMPAKLPSSISALHIMKCPRLEEKCKGKESEDWSKIAHIPMIRINKKLVQ. 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07454 1265 Gene3D - 14 137 - -
Seca4g07454 1265 Pfam Rx N-terminal domain 10 107 IPR041118 -
Seca4g07454 1265 Gene3D - 332 415 IPR042197 -
Seca4g07454 1265 Gene3D Ribonuclease Inhibitor 980 1138 IPR032675 -
Seca4g07454 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 431 IPR027417 -
Seca4g07454 1265 Gene3D - 416 501 IPR036388 -
Seca4g07454 1265 FunFam Probable disease resistance protein At1g61300 149 319 - -
Seca4g07454 1265 Gene3D Ribonuclease Inhibitor 531 940 IPR032675 -
Seca4g07454 1265 SUPERFAMILY L domain-like 491 912 - -
Seca4g07454 1265 PANTHER DISEASE RESISTANCE PROTEIN RP 45 985 IPR044974 GO:0006952
Seca4g07454 1265 Coils Coil 74 94 - -
Seca4g07454 1265 Coils Coil 118 138 - -
Seca4g07454 1265 Gene3D - 147 322 IPR027417 -
Seca4g07454 1265 PRINTS Disease resistance protein signature 266 280 - -
Seca4g07454 1265 PRINTS Disease resistance protein signature 570 586 - -
Seca4g07454 1265 PRINTS Disease resistance protein signature 368 382 - -
Seca4g07454 1265 PRINTS Disease resistance protein signature 194 209 - -
Seca4g07454 1265 SUPERFAMILY L domain-like 870 1252 - -
Seca4g07454 1265 SMART LRR_typ_2 643 666 IPR003591 -
Seca4g07454 1265 SMART LRR_typ_2 596 619 IPR003591 -
Seca4g07454 1265 Pfam NB-ARC domain 176 396 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07454 Seca-Chr4 167817871 167822487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07454 197 817 WRKY Transcription Factor Family AT5G45050 25.637 4.89e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07454 - - lja:Lj0g3v0087809.1 2077.37