Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07449 ATGTGTGTTTTTCTTGTACTAGAACTTACTTTGTCTACCTTTACATTTATCAGGAAAGACAGCCGATATTCTGAAAAGGATGCAGCAGTGATTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACCAGAGAAGATTCACCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGAAGTGCATACTATGTTGCACCGGAAGTGTTAAAACGAAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTAAAGGAGGTAGACTCCATTCTTATGACATTCTGA 441 0.39 MCVFLVLELTLSTFTFIRKDSRYSEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGILKEVDSILMTF. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07449 146 SUPERFAMILY Protein kinase-like (PK-like) 4 142 IPR011009 -
Seca4g07449 146 SMART serkin_6 2 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07449 146 Pfam Protein kinase domain 4 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07449 146 Gene3D Transferase(Phosphotransferase) domain 1 1 144 - -
Seca4g07449 146 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07449 146 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 139 - -
Seca4g07449 146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07449 Seca-Chr4 167654422 167655077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07449 2 139 EF-hand Containing Proteins AT2G17890 83.099 1.67e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca4g07449 Pkinase 2.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07449 K13412 - gmx:100817249 247.669