Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07445 ATGGCTTTTGTGGGAGAGGCATTCCTTTCAGCTTCTGTTGAAGTGTTGTTAGAGAGAATAATTTCCCATGAGTTCCTAGACTTTTTTCATAGAAAGGAGCTTGATGTTTCACTCCTCAAAAAGCTGAAAATAACACTGCTGAGTCTTCAAGCTGTACTGAATGATGCTGAGGAAAAACAAGAATGGCTGGATGAGCTCAGAGATGCTCTCTATGATGCTGATGATTTGTTGGATGAAATCAACTCTGAGGCTTTGAGATGCAAACTCCAAGCTGGGTCTCAAAGTCAACCCATTAGTGACCAGGTTCGGAACTTCCTTTCATCTCCTTTCAAACGATTTTCTGGGGTCATTAATCCTGAAATAGAATCAGTTTTTCAAAGATTGGAGCAATTTTTAGTCCAAAAAGACATCCTTGGACTGAAAGAAGGTGCTTCCGGCCGAGTTTGGCATGGAACACCCACTAGTTCTGTGGTAGATGAATCTGCTATTTATGGTAGAGATGATGACAAAAAGATACTTAAAGATTACTTGTTGTCACAAAATGATGGTGGTAGTGGCAGTAAAATTGGAGTGATTACCATTGTGGGCATGGGTGGACTTGGTAAAACAACCCTTGCTAAACTCCTTTACAATGATCATGAAGTGAAAGAGAAATTTGATTTGAAAGCGTGGGCATTTATTTCAAAGGATTTTGATGTTTGCAGGGTGACTAAAAGCCTTCTTGAATCTGTTAGTTCAAAGCCAGTTGTGACTAATAACTTGAATACTCTACAAGTGAGATTTTTGCTTGTTCTGGATGACATATGGGATGGGAGCTATGATGACTGGAACAAACTGAAGGCCATTTTTAGAGCTGGGGAGATAGGAAGTAAGATCATCATTACAACTCGGGATGAAAGTGTAGCATTAGCCATGCAAACCTATCTTCCTATCCACTATTTGAGATCTCTTCAAAGTGAAGATTGCTGGTCCTTACTTGCCCATCATGCATTTGGACCAAATAACTGCAGGAAACAATCCAAACTAGAAGTAATTGGCAAAGAAATTGCAAAAAGATGTGGTGGCTTACCATTAGCTGCAGAAGCCCTTGGGGGTCTTCTCCGCACCAAATTATTGGAAAAGGATTGGAATAAAGTATTAAAAAGTAACATCTGGGATTTGCCAAATGTCAAGGTACTACCAGCTCTGCTATTGAGCTATCACTATCTTCCTGCTCCTTTAAAACGATGCTTTGCTTATTGTTCAATTTTTCCAAAGAACTCTAGTTTAGATAAGAAGATGGTGGTTTTGCTTTGGATTGCCGAAGGCTTAGTACATCGATCCAAAAGTGACAAAACTATGGAAGAAGTGGGTGATGAATACTTTGATGAATTAGTATCTCGGTCACTAATACGTCGACAGACTGTCAATGACAAAGAAAGCTTTATGATGCATGACCTCATCAATGAATTAGCCACAATTGTTTCATCTGCATATTGTTATAATAATATCACTGAGTTGCCTATCTCTCTTGGAAATTTAATACATCTGCGATACTTAGATCTCTCTAACACTAAAATTGAAAGATTGCCAGATGTAATATGCAAGCTCTACAATCTGCAAACCCTGTTGTTGTCGAAATGTTGCTCACTCATTGAATTACCTGAGGACATTGGAAATTTGGTTAATCTACGCCACCTTGATGTCAGTGATACTAAATTGAAGGAGATGCCTATACAAATAGCCAAACTTCAAAATCTTCAAACTCTGTCCACCTTTGTTGTCAGCAAACAGCAAGATGGATTGAAGGTTGGAGAGCTGAGAAAATTCCCCCATTTACAAGGGAAACTTTCAATCTTAAAGTTACAAAATGTTACTGATCTGTCTGATGCCTTTCAAGCCAACTTGAAGAAGAAAGAACAAATTGATGAGTTGACATTAGAATGGGATTGCAATGCTACTGAAGACTCACAAATGGAAAGGCTTGTACTTGAACAGCTGCAGCCCTCAACAAATTTGAAGAAACTCACCATTCATTTCTTTGGTGGAACCACCTTTCCAAACTGGTTAGGAGATCCCTCATTTGGCAACATGATGTGTTTGCGCATCAGTGGCTGTGATCATTGTTGGTCGCTGCCTCCCCTTGGACAGTTACTTTGCCTCAAAGAACTCATTATTTCTGGACTAAAATCAATAAAGACAGTTGGTTCTGAATTCTATGGAAGTAGTTCCCCTTCTTTTCAGCCATTTCCCTCCTTGGAGATTCTGAGCTTTGAGGAGATGCCAGAGTGGGAGGAATGGAAGTTGATTGGAGGTATAGCTATAAAATTTCCTAGTCTAAGGCGTTTGTTTCTATGTGATTGTCCCAAACTCAAAGGAAACATACCAAAAAACCTTCCTTCCTTAGTTGAACTTGAGTTGTCCCAATGTCCTCTACTTGAGTCACAACATCCATATGAGGAATTTTTACCTCATGAATCCTTGCCGAGTTACACGTCACTTGAGAAATTGCAAATATTCAATAGCTGTGATTCAATGACATCCTTTCAATTAGGCTGTCTGCCTGTGCTCAAAAGTCTCTTCATCTTGGGTTGTAAAAATCTGAAATCTATTTCTGTTGCAGAAGATGCATCCCAAAATCTCTCTTTTCTTCAAAGTTTATCCATATATGCTTGTCCTAATCTGGAGTCATTTCCCCTAGGTGGACTGGCCACTCCTTACCTCAACCATTTCTTGGTGTCAAGTTGTCGCAAGCTTAAGTCACTACCAGAACCAATTAACACACTATCTGGCCTTTATCAATTGAGTATTTATGGGCTTCCGAATCTGCAGGCTTTTGCACAAGACAGTTTACCTGTGAATTTAAGGATACTTGAAGTTTCCAAATGTGGGAGTTTGTCTGCTACAGCTATCACTAAGTGGGGTTTGCAATGGCTTACTTGTCTTGCAGAGTTGCGAATTCGAGGTGATGGTCTTGTGGATGCACTGATGAAAATGAAAGTGTCTTTGCTTCCCACTTCTCTTGTCTCCCTACGCATCTCTCATCTTTACTACTTAAAATGCTTGGAAGGGAAGTGGCTTCAGCATCTCACCTCTCTTGAAAACCTTGAGATCTCAGATTGTCGCCGACTTGAATCCTTAGCAGAAGAGGGACTGCCTTCCTCTCTTTCAGTACTGACTATCAAGCGCTGCCAGTTATTAGAAGCAAGTTGCCAGAGCAATGGAGGGAAAGAGTGGCCTAAGATTGCTCACATTTCATGCATAATCATCAATAACAAAGTGATAATATGA 3270 0.3994 MAFVGEAFLSASVEVLLERIISHEFLDFFHRKELDVSLLKKLKITLLSLQAVLNDAEEKQEWLDELRDALYDADDLLDEINSEALRCKLQAGSQSQPISDQVRNFLSSPFKRFSGVINPEIESVFQRLEQFLVQKDILGLKEGASGRVWHGTPTSSVVDESAIYGRDDDKKILKDYLLSQNDGGSGSKIGVITIVGMGGLGKTTLAKLLYNDHEVKEKFDLKAWAFISKDFDVCRVTKSLLESVSSKPVVTNNLNTLQVRFLLVLDDIWDGSYDDWNKLKAIFRAGEIGSKIIITTRDESVALAMQTYLPIHYLRSLQSEDCWSLLAHHAFGPNNCRKQSKLEVIGKEIAKRCGGLPLAAEALGGLLRTKLLEKDWNKVLKSNIWDLPNVKVLPALLLSYHYLPAPLKRCFAYCSIFPKNSSLDKKMVVLLWIAEGLVHRSKSDKTMEEVGDEYFDELVSRSLIRRQTVNDKESFMMHDLINELATIVSSAYCYNNITELPISLGNLIHLRYLDLSNTKIERLPDVICKLYNLQTLLLSKCCSLIELPEDIGNLVNLRHLDVSDTKLKEMPIQIAKLQNLQTLSTFVVSKQQDGLKVGELRKFPHLQGKLSILKLQNVTDLSDAFQANLKKKEQIDELTLEWDCNATEDSQMERLVLEQLQPSTNLKKLTIHFFGGTTFPNWLGDPSFGNMMCLRISGCDHCWSLPPLGQLLCLKELIISGLKSIKTVGSEFYGSSSPSFQPFPSLEILSFEEMPEWEEWKLIGGIAIKFPSLRRLFLCDCPKLKGNIPKNLPSLVELELSQCPLLESQHPYEEFLPHESLPSYTSLEKLQIFNSCDSMTSFQLGCLPVLKSLFILGCKNLKSISVAEDASQNLSFLQSLSIYACPNLESFPLGGLATPYLNHFLVSSCRKLKSLPEPINTLSGLYQLSIYGLPNLQAFAQDSLPVNLRILEVSKCGSLSATAITKWGLQWLTCLAELRIRGDGLVDALMKMKVSLLPTSLVSLRISHLYYLKCLEGKWLQHLTSLENLEISDCRRLESLAEEGLPSSLSVLTIKRCQLLEASCQSNGGKEWPKIAHISCIIINNKVII. 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07445 1089 ProSiteProfiles Leucine-rich repeat profile. 509 530 IPR001611 GO:0005515
Seca4g07445 1089 SMART LRR_typ_2 507 530 IPR003591 -
Seca4g07445 1089 SMART LRR_typ_2 554 577 IPR003591 -
Seca4g07445 1089 Pfam Rx N-terminal domain 8 94 IPR041118 -
Seca4g07445 1089 SUPERFAMILY L domain-like 818 1076 - -
Seca4g07445 1089 Gene3D - 150 309 IPR027417 -
Seca4g07445 1089 PRINTS Disease resistance protein signature 255 269 - -
Seca4g07445 1089 PRINTS Disease resistance protein signature 790 806 - -
Seca4g07445 1089 PRINTS Disease resistance protein signature 191 206 - -
Seca4g07445 1089 PRINTS Disease resistance protein signature 353 367 - -
Seca4g07445 1089 Gene3D Ribonuclease Inhibitor 786 944 IPR032675 -
Seca4g07445 1089 SUPERFAMILY L domain-like 477 807 - -
Seca4g07445 1089 Gene3D - 399 485 IPR036388 -
Seca4g07445 1089 Gene3D - 35 118 - -
Seca4g07445 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 414 IPR027417 -
Seca4g07445 1089 Gene3D Ribonuclease Inhibitor 945 1080 IPR032675 -
Seca4g07445 1089 Coils Coil 39 59 - -
Seca4g07445 1089 Coils Coil 63 83 - -
Seca4g07445 1089 Gene3D - 316 398 IPR042197 -
Seca4g07445 1089 PANTHER DISEASE RESISTANCE PROTEIN RP 34 843 IPR044974 GO:0006952
Seca4g07445 1089 FunFam Probable disease resistance protein At1g63360 400 487 - -
Seca4g07445 1089 Pfam NB-ARC domain 188 381 IPR002182 GO:0043531
Seca4g07445 1089 Gene3D Ribonuclease Inhibitor 486 762 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07445 Seca-Chr4 167244215 167247958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07445 497 592 WRKY Transcription Factor Family AT4G12020 42.268 9.91e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07445 - - vun:114184488 1161.75