Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07443 ATGAAAATCCCTTGTTGCTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGGGTTCCTCTTCTGCTTCAATGTGGCCACGGCTTCTGCAGAGAGTGCCTTTCTAGAATGTTCTCGGCTTCGCCGGACGCCACGCTCACCTGCCCTCGCTGCCGCCACGTGTCCACCGTCGGCAACTCCGTTCAGGCGCTGCGCAAGAACTACGCCGTGCTTGCGCTCATCCACTCCGCCGCCGACGCATCCTCCGGTGGCGGCGGTGGCAGAGCGTCGAATTTCGACTGCGACTGCACCGACGAGGAAGACGGCGACGGCGAGGAGGACGACGACGACGACGGAGAGAAGCGGCGCCGGAACAGCCGCGGCTCGCAGACGTCGAGCTCCGGCGGTTGCGCGCCGGTGATCGAAGTCGGTGCGCACCAGGACCTGAAGCTGGTGAGGCGGATTGGGGAGGGGAGGAGGGCTGGCGTGGAGATGTGGACGGCGGTGATTGGCGGTGGGCGGTGCCGGCATCACGTAGCGGTGAAGAAGGTGGTGATGGCGGAGGGGATGGATTTGGATTGGATGCAAGGGAAGCTGGAGAATTTACGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACGTTCCATGGAGCAATGAAGGTGGAAGAGAGTTTGTGTATCGTGATGGATAGGTGTTATGGATCGGTTCAGTCTGAGATGCAGCGCAACGAGGGGAGGCTGACTTTGGAGCAAGTGCTAAGGTATGGAGCAGACATTGCACGAGGGGTTGTCGAGCTTCATGCTGCAGGCGTTGTTTGTATGAATTTAAAACCTTCCAATCTACTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCTCGACCAGAGTGCGACTCCTCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACTGCACCAGAGGCATGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTGCCATTCCTTGGGCCGGTTTAAGTGCAGAGGAAATCTATCGAGCAGTTGTTAAGGCAAAGAAACTGCCTCCACAATATGCCAGTGTGGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAGTGCAATGTTAGCAATATTTCTCCGTCATTTACAGGAAATACCACGCAGCCCACCTGCAAGCCCTGATAATGACTTTGTTAAGGGCTCTGTTTCAAATGTGATGGAGCCATCCCCAGTACCTGAGTTAGAAGTTCCTCAGGAAAACCCAAACCATCTTCATCGACTTGTGTCTGAAGGGGATGTCACGGGTGTTAGAGACCTTCTAGCAAAGGCTGCATCAGAAAATGGTAGCAACTACATATCTTCTCTATTGGAAGCTCAAAATGCTGATGGGCAAACGGCTCTCCACTTAGCTTGTAGACGTGGCAGTGCAGAACTTGTTGAAACAATTCTAGGGTATGGAGAGACAAATGTTGATGTCTTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCCTTAGCAGCTGGGTCCCCTGAATGCGTTCGTAGCCTTATCAAAAGAAATGCTAATGTGAGGTCGCGATTGAGAGATGGCTTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGCCAACCAGATTGTATGCGAGAATTAGTATTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAATCTGTACTGCACAGGGCAGTTGCCAAGAAGTACACAGACTGTGCTCTTGTGATAGTGGAAAATGGAGGCTGTAGATCAATGGCCATCTTGAATTCAAAGAATTTGACGCCACTGCACTTGTGTGTGGCAACTTGGAATGTTGCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTGCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAAAAAGACCATGAAAGTGAGGGCAGAGAACTGGTGCGAATATTGCTTGCAGCAGGAGCTAATCCATCCGCACAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACTAACGATGTGGACCTGGTTAAGGTTATTCTTTCTGCTGGCGTTGATGTGAACATTCGGAATGTGCACAACAGTATACCTCTTCACTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTGCTGGGGCAGATTACAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAAACGGCAAAAATGATACGTGAAAATCTTGACTGGCTTATTGTTATGCTAAAGAATCCTGATGCTGATATTGAAGTCAGAAACCACAGTGGCAAGACACTGCGTGACATCTTAGAGGCTCTCCCTCGAGAATGGATATCCGAAGATCTGATGGAGGCACTCATGAATAGGGGAGTTCATTTGTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAATTTAAAAGAACTGTCATAACTCCAACATATGGGTGGCAAGGTGCTAGGCCAAAGAGTGTTGGCTTTGTGCAAAGTGTTCCAGACAGAGATAATCTCATCGTTTCATTTTGTTCGGGAGAAGTTCATGTTCTGGCAAATGAGGTTATAAAAGTCATTCCATTGGACAGGGGACAACATGTACAACTGAAAGAAGATGTGAAAGAGCCCAAGTTTGGTTGGCGTGGGCAGTCGCGGGACAGCATTGGAACAGTATTATGTGTTGATGATGATGGAATCCTCCGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGAGTTGAGGAATTCAAGGTTGGGGACTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGATTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCAGACAGCAGTCTGTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGCACCTTTTAGGATTGGTGATCGGGTATGTGTGAAGCGATCCGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATAGATATACCAAATCGACCCATACCATGGCAGGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGCAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATATGGGTGTTGCCTTTTGCTTCAGAAGTAAGCCTTTTTCTTGCTCAGTCACTGATGTGGAGAAAGTTCCCCCTTTTGAGGTGGGTCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTTGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGAATTGACATGGATGGTGCTCTCAATGTGAGGGTCACTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGACTTCCAGGATTTGAAGTTGGGGATTGGGTACGCTCAAAACCAAGCCTCGGAAACAGACCAAGTTATGACTGGACTAGTGTTGGGAGAGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACGGATGTTGAAAAGGTTCCTAGCTTTAAAGTCGGACAGTATGTTAGATTCAGAACTGGTTTGGTTGAACCAAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAAGGGATTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTTGCATTCTTTGGTTTGCCAGGACTCTGGAGAGGAGATCCGTCAGACCTGCAGATTGAGCAAATCTTTGAAGTGGGAGAGTGGGTGAGATTGAAAGATAATGCAAATAATTGGAAATCAATTGGGCCAGATAGTGTTGGGGTCGTTCAAGGAATAGGTTATGAAGGAGATGAATTGGACAGAAGCATTTTTGTTGGCTTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCGTCGTTGGACAAAAGGTTAGAGTTAAACAATATGTAAAACAACCAAGATTTGGTTGGTCAGGGCATACCCATGCTAGTATTGGGACTATACAAGCAATTGATGCTGATGGAAAGCTTCGAATATACACTCCTGCAGGTTCAAAAGCATGGATGTTGGACCCATCTGAAGTGGAGGTGGTGGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTAAGGGTTAGAGCATCAGTTTCAACCCCAACCCATCATTGGGGAGAAGTGAGTCATTCAAGCATTGGGGTGGTGCATCGGATGGAAGATGAGGATCTGTGGGTGGCGTTATGTTTTATGGAGAGGCTGTGGCTCTGTAAGGCATGGGAAATGGAACGGATCAGGCCATTTAAAGTGGGGGACAAGGTAAGGATCAGAGATGGACTGGTCGCCCCACGGTGGGGATGGGGAATGGAGACACATGCCAGCAAAGGACAGGTGGTAGGGGTAGATGCAAATGGCAAACTAAGAATAAGGTTCCGATGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCTGATCTTGCCCTTGATGAGAACTGA 4881 0.4802 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASPDATLTCPRCRHVSTVGNSVQALRKNYAVLALIHSAADASSGGGGGRASNFDCDCTDEEDGDGEEDDDDDGEKRRRNSRGSQTSSSGGCAPVIEVGAHQDLKLVRRIGEGRRAGVEMWTAVIGGGRCRHHVAVKKVVMAEGMDLDWMQGKLENLRRASMWCRNVCTFHGAMKVEESLCIVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNDFVKGSVSNVMEPSPVPELEVPQENPNHLHRLVSEGDVTGVRDLLAKAASENGSNYISSLLEAQNADGQTALHLACRRGSAELVETILGYGETNVDVLDKDGDPPLVFALAAGSPECVRSLIKRNANVRSRLRDGFGPSVAHVCAYHGQPDCMRELVLAGADPNAVDDEGESVLHRAVAKKYTDCALVIVENGGCRSMAILNSKNLTPLHLCVATWNVAVVKRWVEVATADEIAEAIDIPSPIGTALCMAAASKKDHESEGRELVRILLAAGANPSAQDSQNGRTALHTAAMTNDVDLVKVILSAGVDVNIRNVHNSIPLHLALARGAKACVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPDADIEVRNHSGKTLRDILEALPREWISEDLMEALMNRGVHLSPTIFEVGDWVKFKRTVITPTYGWQGARPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVIKVIPLDRGQHVQLKEDVKEPKFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKVEDFKQVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKIVRIDMDGALNVRVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWTSVGRESLAVVHSVQDSGYLELACCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGAQPESQGIITSIHADGEVRVAFFGLPGLWRGDPSDLQIEQIFEVGEWVRLKDNANNWKSIGPDSVGVVQGIGYEGDELDRSIFVGFCGEQEKWVGPSSHLERVDKLVVGQKVRVKQYVKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKAWMLDPSEVEVVEEKELCIGDWVRVRASVSTPTHHWGEVSHSSIGVVHRMEDEDLWVALCFMERLWLCKAWEMERIRPFKVGDKVRIRDGLVAPRWGWGMETHASKGQVVGVDANGKLRIRFRWREGRPWIGDPADLALDEN. 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07443 1626 SUPERFAMILY RING/U-box 5 58 - -
Seca4g07443 1626 PRINTS Ankyrin repeat signature 513 528 IPR002110 GO:0005515
Seca4g07443 1626 PRINTS Ankyrin repeat signature 743 757 IPR002110 GO:0005515
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Seca4g07443 1626 FunFam E3 ubiquitin-protein ligase KEG 452 682 - -
Seca4g07443 1626 SUPERFAMILY Ankyrin repeat 503 805 IPR036770 -
Seca4g07443 1626 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1625 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Seca4g07443 1626 SMART ANK_2a 687 722 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 614 645 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 649 680 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 512 542 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 760 789 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 727 756 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 793 828 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 581 610 IPR002110 GO:0005515
Seca4g07443 1626 SMART ANK_2a 546 575 IPR002110 GO:0005515
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat profile. 581 613 IPR002110 GO:0005515
Seca4g07443 1626 FunFam E3 ubiquitin-protein ligase KEG 2 81 - -
Seca4g07443 1626 Pfam RING-type zinc-finger 6 49 IPR027370 -
Seca4g07443 1626 SMART ring_2 6 51 IPR001841 -
Seca4g07443 1626 FunFam E3 ubiquitin-protein ligase KEG 726 859 - -
Seca4g07443 1626 FunFam E3 ubiquitin-protein ligase KEG 226 442 - -
Seca4g07443 1626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Seca4g07443 1626 Gene3D - 685 765 IPR036770 -
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat region circular profile. 512 536 - -
Seca4g07443 1626 MobiDBLite consensus disorder prediction 98 132 - -
Seca4g07443 1626 CDD RING-HC_KEG-like 3 59 - -
Seca4g07443 1626 Gene3D Transferase(Phosphotransferase) domain 1 137 442 - -
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat region circular profile. 760 792 - -
Seca4g07443 1626 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Seca4g07443 1626 Pfam Mind bomb SH3 repeat domain 1502 1621 IPR040847 -
Seca4g07443 1626 Pfam Mind bomb SH3 repeat domain 1372 1493 IPR040847 -
Seca4g07443 1626 Pfam Mind bomb SH3 repeat domain 1245 1366 IPR040847 -
Seca4g07443 1626 Pfam Mind bomb SH3 repeat domain 1048 1112 IPR040847 -
Seca4g07443 1626 Pfam Mind bomb SH3 repeat domain 1120 1237 IPR040847 -
Seca4g07443 1626 Pfam Mind bomb SH3 repeat domain 868 986 IPR040847 -
Seca4g07443 1626 Pfam Ankyrin repeats (3 copies) 492 574 IPR002110 GO:0005515
Seca4g07443 1626 Pfam Ankyrin repeats (3 copies) 706 791 IPR002110 GO:0005515
Seca4g07443 1626 Gene3D - 766 854 IPR036770 -
Seca4g07443 1626 Pfam Protein kinase domain 145 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat region circular profile. 727 758 - -
Seca4g07443 1626 SUPERFAMILY Protein kinase-like (PK-like) 138 454 IPR011009 -
Seca4g07443 1626 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat profile. 512 536 IPR002110 GO:0005515
Seca4g07443 1626 Gene3D - 463 684 IPR036770 -
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Seca4g07443 1626 ProSiteProfiles Protein kinase domain profile. 142 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07443 1626 Pfam Ankyrin repeats (many copies) 584 631 IPR002110 GO:0005515
Seca4g07443 1626 ProSiteProfiles Ankyrin repeat profile. 760 792 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07443 Seca-Chr4 167141892 167157344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07443 204 460 MAP Kinase Kinase Kinase AT1G53570 26.136 1.03e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Seca4g07443 Pkinase 2.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07443 K16279 - gmx:100777576 3095.06