Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07440 ATGTTTGGACTTGATGGAATAGTACCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCAATCACGCTCCGTTCAAAATGAGAGGCCATATGTGTGTACTGTCAATGATTGTCAGTCAAGTTACAGAAGAAAGGACCACCTGACTCGTCACCTTCTACTGCATCAAGGGAAGACTTTCACATGTCCTGTTGAGAATTGCAACCTTGAATTCTCTCTCCAAAGCAATTTGAAAAGACATTTCAACGAGTTCCATGATGAAAATTCTAACCCTAGTAATGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATCGGCTGTGGAAAGGTTTTCAGATTTGCATCAAAGCTACAAAAGCATGAAGATTCTCATGTTAAGCTAGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTTAGGGCCCATGTTAACTCCTGCCATCAATATGTGACCTGTGATACTTGTGGGACAAAGCAACTGAAGAAGAATATTAAACGGCACCTCCGCACACATGAAGCTGGCAGTTCATCAGAGGCATTTCAATGTGAATTTAAGGGTTGTGGCTGCACATTCTCAAGTAAATCTAATCTTCATAAGCATGAGAAGGCTGTGCACTTCAAAGAAAAACCTTTTGTGTGTGGGTTTCCTGATTGTGGAATGAGATTTGCTTACAAACACGTGAGAGATAAACACGAAAAAACTGGCAAACACGTTTTTACCCTTGGTGATTTTGAAGAAGCCGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGAAGAAGAGAACGTGTCCTACTGTTGAAATGTTAGTTAGAAAGAGAGTTACCCCACCTAGTCAATTGGAGAACTGGTTGCTCATGCAGGATAGTGACTAA 909 0.4246 MFGLDGIVPGRETSCEAPSRMPQSRSVQNERPYVCTVNDCQSSYRRKDHLTRHLLLHQGKTFTCPVENCNLEFSLQSNLKRHFNEFHDENSNPSNVESQKQYVCPEIGCGKVFRFASKLQKHEDSHVKLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYVTCDTCGTKQLKKNIKRHLRTHEAGSSSEAFQCEFKGCGCTFSSKSNLHKHEKAVHFKEKPFVCGFPDCGMRFAYKHVRDKHEKTGKHVFTLGDFEEADEQFRSRPRGGKKRTCPTVEMLVRKRVTPPSQLENWLLMQDSD. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07440 302 ProSitePatterns Zinc finger C2H2 type domain signature. 225 249 IPR013087 -
Seca4g07440 302 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Seca4g07440 302 Pfam Zinc finger, C2H2 type 33 57 IPR013087 -
Seca4g07440 302 Pfam Zinc finger, C2H2 type 192 217 IPR013087 -
Seca4g07440 302 Pfam Zinc finger, C2H2 type 102 126 IPR013087 -
Seca4g07440 302 Pfam Zinc finger, C2H2 type 62 87 IPR013087 -
Seca4g07440 302 Gene3D Classic Zinc Finger 89 160 - -
Seca4g07440 302 Gene3D Classic Zinc Finger 60 88 - -
Seca4g07440 302 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g07440 302 SUPERFAMILY beta-beta-alpha zinc fingers 173 231 IPR036236 -
Seca4g07440 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 92 IPR013087 -
Seca4g07440 302 SUPERFAMILY beta-beta-alpha zinc fingers 99 126 IPR036236 -
Seca4g07440 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 131 IPR013087 -
Seca4g07440 302 Gene3D Classic Zinc Finger 220 246 - -
Seca4g07440 302 SUPERFAMILY beta-beta-alpha zinc fingers 27 59 IPR036236 -
Seca4g07440 302 PANTHER ZINC FINGER PROTEIN 28 292 - -
Seca4g07440 302 ProSitePatterns Zinc finger C2H2 type domain signature. 64 87 IPR013087 -
Seca4g07440 302 SUPERFAMILY beta-beta-alpha zinc fingers 60 88 IPR036236 -
Seca4g07440 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 222 IPR013087 -
Seca4g07440 302 ProSitePatterns Zinc finger C2H2 type domain signature. 35 57 IPR013087 -
Seca4g07440 302 Gene3D Classic Zinc Finger 161 219 - -
Seca4g07440 302 ProSitePatterns Zinc finger C2H2 type domain signature. 136 159 IPR013087 -
Seca4g07440 302 ProSitePatterns Zinc finger C2H2 type domain signature. 104 126 IPR013087 -
Seca4g07440 302 Gene3D Classic Zinc Finger 22 59 - -
Seca4g07440 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 62 IPR013087 -
Seca4g07440 302 SMART c2h2final6 62 87 IPR013087 -
Seca4g07440 302 SMART c2h2final6 223 249 IPR013087 -
Seca4g07440 302 SMART c2h2final6 102 126 IPR013087 -
Seca4g07440 302 SMART c2h2final6 162 183 IPR013087 -
Seca4g07440 302 SMART c2h2final6 134 159 IPR013087 -
Seca4g07440 302 SMART c2h2final6 192 217 IPR013087 -
Seca4g07440 302 SMART c2h2final6 33 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07440 Seca-Chr4 167068053 167071306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07440 30 252 C2H2 Transcription Factor Family AT1G72050 50.545 1.67e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g07440 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07440 K09191 - gmx:100801812 481.87