Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07434 ATGGACACCAAACTCCTAACAATTCGCACCCTCCTCTCCAATCTCAACTCCCTCTCCGACCAAACCCGCCTCGCCGCCCTCCGCCACCTCCACCTCATGTCCAACCAAGACCCCGCCTCCCGTTCCCTCATCGCCACCACAGACCCCGCCATCCCTCTCCTCTCCGACGCCCTCTACTCCACTTCCCACCCCATCCAAGACCACGCCTCCGCTACCCTCTTCAACCTCTCAATCTCCGTCCGCCACCCCCTCGTCTCCTCCGCCACCCTCCTCCCCGCCCTCTCCCACCTCCTCTCCCACCACGCCGCCTCCTCCTCCCCCTCCGCCGTCCAGTCCGCCGCCGCCACCCTCCACAGCCTCCTCACCACCGCCCCCGAGTTCCGCCCCCTCGTTGGCGCCAACCTCCACACCCTCCGCGCCCTCATCGACATAATCAACAACTCAGACTCGCCAACGAGGTCCGTGAAGGACGCACTCAAAGCCTCCTTCGCCGTAGCGCTTCACCCTCCGAACCGAACCGTTATGGTCCGGCTCGGCGCGGTTCCCGCCCTTTTCGGCCTCTTGGCAAATGCGAGGAAGAGAAAAACCGGTATAATTGAGGACGCTACGGCGGTGATTGCGCAGATCGCGGGGTGCGAGGAGAGCGAGGAAGCGTTTCGGAAGGTTTCAGGGATTCCGGTTTTGGTGGGTTTGTTAGGTTTCGTTTCTGGAAGCTGTGGTGGTGGTTTGAGGACCAGGGAGAATGCGGTTTCCGGGTTGTTGAATTTGGTGAGGTATGGAGGGGATAGAGTTGCTTTGGAGGTTAAAGAGAGAGGTGATGTGTTGGATGGGATTGTGTATGTGCAAGAACATGGTAGCACCAAAGGGAAGAGCAAAGCTGTGGCTTTGTTGAAGCTTTTGCTTGAAGGTGGAAGCAATGACAAAATTGTTGAAGATTTGTATCCTGTTGAGTCACACGTGTGA 963 0.5867 MDTKLLTIRTLLSNLNSLSDQTRLAALRHLHLMSNQDPASRSLIATTDPAIPLLSDALYSTSHPIQDHASATLFNLSISVRHPLVSSATLLPALSHLLSHHAASSSPSAVQSAAATLHSLLTTAPEFRPLVGANLHTLRALIDIINNSDSPTRSVKDALKASFAVALHPPNRTVMVRLGAVPALFGLLANARKRKTGIIEDATAVIAQIAGCEESEEAFRKVSGIPVLVGLLGFVSGSCGGGLRTRENAVSGLLNLVRYGGDRVALEVKERGDVLDGIVYVQEHGSTKGKSKAVALLKLLLEGGSNDKIVEDLYPVESHV. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07434 320 SMART arm_5 212 258 IPR000225 GO:0005515
Seca4g07434 320 SMART arm_5 168 211 IPR000225 GO:0005515
Seca4g07434 320 SMART arm_5 77 122 IPR000225 GO:0005515
Seca4g07434 320 Gene3D - 5 309 IPR011989 -
Seca4g07434 320 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 179 224 IPR000225 GO:0005515
Seca4g07434 320 SUPERFAMILY ARM repeat 7 305 IPR016024 -
Seca4g07434 320 PANTHER U BOX DOMAIN-CONTAINING 8 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07434 Seca-Chr4 166842705 166843667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07434 8 300 U-box Gene Family AT1G23030 28.912 2.58e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07434 - - gmx:100803111 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07434 4 166842705 166843667 Seca4g07434 4 166842705 166843667 ECH