Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07401 ATGTCCACGGACGATTCCTTCTCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTTACTCCTCCGGACAACGTCCCGCATTTCAATGAACGCTGCGAAATCTTTAGCGACGGCGCGGAGGTCGGGTTCCGTTGCCCGAGCGGCGTCGTTTTGACTTCGTTGGAATGCGGGAGCTCGAAGGCGAAGAGGACGAGGAAGATTGGAGCGGTGAATGGGAGCGTAAGCGTGGTTCATCAGCTTCACGCATTGGTTAGCCGCAACTGCATGAAAATCGATGCTCATGTGGTGTGTGTTGAGGTGCCTAGGGCGGTGGTGGTCGTCGACGTTTACCTCCCTATTCAGTTGTGGAGTGGCTGGCAGTTCCCGAGATCGGGATCCGTTGCCGGTGCTATTTTTCGCCATTTGAGCTGTGATTGGGATGAGAGAAGTTCAATGCTTTCTTATCCAAACTATTATAGGAAGACTCATGGAGCAAATAAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGCTGCAAGCTCCATTCCCGTGTGAGCGATTCTTCAAGGAGAAAACTCTTTGAACTTCATGAAATCTTCAAGACAGTACCTGGTGTAGGAAAACAGCAGAAGTTTATTAGTTCCAAGATAGTACCTATGGATAATAACACTTGCAGATCTGGGATTTGGGAGATATCTGATGATATTTTAACTAAAATTATAGCTTCCTTGGGCCCAATGGACCTCACTAAGGTTTCAGCAACGTGTCGTCATCTAAGATCCTTGGCTGCGTCAGTAATGCCTTGCACAAAGTTAAATCTGTATCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAACGAAATGCTGAACTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCACTGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAACCTGGCTTGGGTAAGACTGTAACAGCTCTATCTCTTATTGTGAAGACGCAAAGTACATTGGCCAACCCACCAAATAGAGCACAAGTAGTCTGGTGTCAACATAATGGTAACAAGAAATGTGGCTATTATGAGATCAGTGGTAATAATAACGTTACTGGTTGTACTATCTCGGGTAAGAGGGATGTGTGCCAAGATACCAGTAGAAATAATGAGAACCATGATTACCCCTCCAAAAGAGCTAGATTGATGGATCCTGGTCAGAAAATCACTAAACTTCATGGTTCTTGTTCTGGAGAAGAAAACAAATCACCAGTAAATGCTAGCTTTGAGGAATCTATGCCTGCAAGTCGGTGCACTAGGAGCTTGAGTCGCATAAAAAAGAATCTAAATTTCACATATGAAGAAGAAGCCATGGTGTTTGATGGAAGAAAAGTCGGTGAAAGATCAATAAAAGCAAAGCAAGCATCAGATGTTGCATCCCATGGATCTGAAAACAAGCTAGTTGATACCTCACATGGATGTGGACAGAGTCACAAGTGGCCTAGGAAGCAAAAAGTTGATAGTTTAGAATACAACGATACATGGATTCAGTGTGATGCTTGTCGCAAGTGGCGAAAGCTTTCAGACAGTAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGTGTCCCTGAACAATATTTTCAGAATAGCTGGAAGATAACATACATGCCAGGATTTTACTTGAAAGGAACTTCTGGGGGTGACAAACAAAATGTTTCATTTTTCATTAGTGTGCTCAAGGAGCACTACTCATTGATAAATTCTCAGACTAGGAAAGCCCTTGCTTGGTTGGCTAAAATTTCAATGGACAAGCTTGCATTAATGGAAACAAATGGCATACGGGGTCCTATTTTAAACAATTGCACTGTGTCTAATGGGCATTTTAATCCATTCCACAAAATATTTCTAGCATTTGGCCTCATAAAGAGAGTTGAGAAAGGTGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGTGAGCCATTGGATTTTGTTAGGTTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACCTGGTTGATCATTGGAAATCACAAATTGAAAAGCATGTTAGGCCTGGTCAATTGCAGGTTTATGCTTGGACTGATCATCGGAAGCCATCTGCACACTGTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTAAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTCTGATGCAAGTGCACTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGTTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACGGCTACAAATCGATGGATACTAACAGGAACTCCAACACCTAACACCCCTAACAGCCAACTTTCACATCTACAACCTTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCTGAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGTTGCATTTACTTCACAAATGCATGATTAGTGCAAGAAAAATAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTACTCACAGTTCGGCGTAATATATTGATGGCTGATTGGAACGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGCAGTGCAACTATAAAAAATGTTAGACTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATGCCTCCATAAGATACAATCTCCTGTTTGGTGGTCAATGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGGCATCTATTGTGCCTGGATTGTGTTTCAATAGACAATACGATGTGTACATATCCTGGCTGCGGTAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCTCCTATCTTGTACAAAGGTTGAAAGCTTTGCAAGGAACCAGTGAAGAGATGAGCTGCTATACAAATAATAGCAATGATGAGATGCATACCGAGAATAGTTTACCTTTGCATACGAGAGATGTGAAATCATCATTCCAGGAAGGTTCTATAAGGAGCACTAAGGCCAATTTTGTTCCTGAAAAAGTTCTGATATTTTCTCAATTTCTGGAACATATACATGTCATTGAACAGCAGGTGCTTTTTCTGTGCCACAGTTTGGCTGTGATCTTTTGTGAATCTTTTCTATTTTATCTTGTAGCCATCTGCAAATCCTTTTACATATGA 3606 0.4221 MSTDDSFSDHKLCGFLCAVLTVTPPDNVPHFNERCEIFSDGAEVGFRCPSGVVLTSLECGSSKAKRTRKIGAVNGSVSVVHQLHALVSRNCMKIDAHVVCVEVPRAVVVVDVYLPIQLWSGWQFPRSGSVAGAIFRHLSCDWDERSSMLSYPNYYRKTHGANKSIWNLSDCHVLGCKLHSRVSDSSRRKLFELHEIFKTVPGVGKQQKFISSKIVPMDNNTCRSGIWEISDDILTKIIASLGPMDLTKVSATCRHLRSLAASVMPCTKLNLYPHQQAAVEWMLHRERNAELLPHPLYVALSTDDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLIVKTQSTLANPPNRAQVVWCQHNGNKKCGYYEISGNNNVTGCTISGKRDVCQDTSRNNENHDYPSKRARLMDPGQKITKLHGSCSGEENKSPVNASFEESMPASRCTRSLSRIKKNLNFTYEEEAMVFDGRKVGERSIKAKQASDVASHGSENKLVDTSHGCGQSHKWPRKQKVDSLEYNDTWIQCDACRKWRKLSDSSMANSSAAWFCSMNTDPLYQSCSVPEQYFQNSWKITYMPGFYLKGTSGGDKQNVSFFISVLKEHYSLINSQTRKALAWLAKISMDKLALMETNGIRGPILNNCTVSNGHFNPFHKIFLAFGLIKRVEKGVCRWYYPQNLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKSQIEKHVRPGQLQVYAWTDHRKPSAHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLTATNRWILTGTPTPNTPNSQLSHLQPLLRFLHEEAYGLNLKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYASIRYNLLFGGQCVRCKEWCRLPLITPCRHLLCLDCVSIDNTMCTYPGCGNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALQGTSEEMSCYTNNSNDEMHTENSLPLHTRDVKSSFQEGSIRSTKANFVPEKVLIFSQFLEHIHVIEQQVLFLCHSLAVIFCESFLFYLVAICKSFYI. 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07401 1201 ProSiteProfiles Zinc finger CW-type profile. 525 576 IPR011124 GO:0008270
Seca4g07401 1201 SMART ultradead3 267 856 IPR014001 -
Seca4g07401 1201 Gene3D - 524 578 - -
Seca4g07401 1201 SMART fbox_2 229 269 IPR001810 GO:0005515
Seca4g07401 1201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 678 843 IPR014001 -
Seca4g07401 1201 SUPERFAMILY F-box domain 218 262 IPR036047 GO:0005515
Seca4g07401 1201 CDD F-box_SF 228 260 - -
Seca4g07401 1201 CDD DEXDc_SHPRH-like 707 884 - -
Seca4g07401 1201 MobiDBLite consensus disorder prediction 492 508 - -
Seca4g07401 1201 ProSitePatterns Zinc finger RING-type signature. 1021 1030 IPR017907 -
Seca4g07401 1201 MobiDBLite consensus disorder prediction 488 515 - -
Seca4g07401 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 353 IPR027417 -
Seca4g07401 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 882 IPR027417 -
Seca4g07401 1201 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 92 1172 - -
Seca4g07401 1201 Gene3D - 692 887 IPR038718 -
Seca4g07401 1201 Pfam F-box domain 229 263 IPR001810 GO:0005515
Seca4g07401 1201 Pfam CW-type Zinc Finger 530 573 IPR011124 GO:0008270
Seca4g07401 1201 Pfam SNF2-related domain 274 941 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07401 Seca-Chr4 165522197 165534880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07401 713 1107 RAD5 or RAD16-like Gene Family AT5G22750 26.959 1.80e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g07401 SNF2_N 7.6e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07401 - - gmx:100803102 1934.07