Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07350 ATGTCTGCTTGCTTAGAAAAATGGGTCACACTTAACGATATCTCTCCCACAATTCATCCTTGGTTCACTAGAGTTCAGGTTATCCGAATATGGCCAACAACTTTCTGTTCTCATCCCACTCGAGTTCTTTCAGTTGAAATTGTGTTCATTGATGCTCAGGGAACCAAGATTCAAGGGTCTATTAGTAGAGATATTCTTAGGATGAGACGCATAACCATGGAGGAGGGCCATGAGTATGAAATCCAACGAGCTTCTGTGGTTCCAAACAATGGAAAGGACCGACCAACTTCTCATCCTTTTAGATTGGTTTTCAACATGAACTCAATAATAGTCCTGCTTGAAACTACCCCTTTGATTTCCTACGGTTTGTCTCCTGTAACTACCATCGATATAGTAAGGATCACCTCCCCCACAAAAATCCTTGTGGACAAAGTTGGAATTTTAACTTCTATTTCATCGGAAAGGGAATATGTGAAGGATGGAAAATACATTAAGGCGATTTCCTTGGAGATTAGAGACCCCACAGGGAAGACTGAATGTGTGTTATATGATGAGTATGTCGAAGATGTCAAACAGTTCCTCAAAAGGCATGGTCCAACCACCCCAATAGTGGTCGTCCAGTTTGCTCGAGTTGTTAGTAAGGGGGAAGTTGTCCTTGGGGAAGCTGCTGTTGAAAGTGTCCAAAATTTAGCAAGAATATTATTCAATCCTACCATTCCCGAGGTTTTCAACATGAAAAAATGGTTAGTCATCAATGGGATTAAGTTAGACAATCGAGTTGAATATATTAACCTGCACATGCCAAACCTGACTTTGCGAGATGAATTTCTATTGTATCATCCTAGAAGACAGATTGCCCAAGTCCTAAGCCGGGAAGAGCTTGGCCTGTTTGTTGTTTGGGGAAGAATTATTTCCCTCATGGAAGAAGAAAATTGGTGGTTTACTGAGTCCAAGCATCATACTTGTGCTTCACAAGGCAATCCATTACAGCCATGTGATGGCTATTTTAGTGTTATTCCAAGGTACCACTTAAAAGTTGAAGTCTTTGACAATGAGGACGAGTGTAAATTTTTGCTGGGTGATGAAGATGTACACAAGTTGTTGGATGTATCATGCAAAGATTTACTTCCTTCCATTGAGGATCCAAACTCCGAACTTTATCCTCCTATTTTTGAAAAGCTGATTGATAAGAGTATGTTGTTTTTGGTGGAGAAAAAATTCCCTAATTCTTATGTTAATGATGGTTATTTCAAGGTGAAAAGGGTTTGTGATGTTCCAGAGCTGATTAGAATGTACTTGAGGGGACAGTTTTTCCGTCTTCATCACACTACAAGGGACACAGTAGCAAAATTACTTGGGGTTGAAGGACCTGTGCTCCATTCCAATAATGCTCATGAAAGCTCACATGCCAGTGCCTTAGCAGTTGATAACTTTTCAACTACAGCTTCTGACATTGCTCAGGCATCTTCATCCAATAGTGTGTCATTCAACAATCAGAATATTGGGATTACACCTAACATTCCTGTTGAAGAATCTGATGTTGAACCAGTTGATAAGCATTGCTTGGACTCTACACCCTAA 1581 0.4023 MSACLEKWVTLNDISPTIHPWFTRVQVIRIWPTTFCSHPTRVLSVEIVFIDAQGTKIQGSISRDILRMRRITMEEGHEYEIQRASVVPNNGKDRPTSHPFRLVFNMNSIIVLLETTPLISYGLSPVTTIDIVRITSPTKILVDKVGILTSISSEREYVKDGKYIKAISLEIRDPTGKTECVLYDEYVEDVKQFLKRHGPTTPIVVVQFARVVSKGEVVLGEAAVESVQNLARILFNPTIPEVFNMKKWLVINGIKLDNRVEYINLHMPNLTLRDEFLLYHPRRQIAQVLSREELGLFVVWGRIISLMEEENWWFTESKHHTCASQGNPLQPCDGYFSVIPRYHLKVEVFDNEDECKFLLGDEDVHKLLDVSCKDLLPSIEDPNSELYPPIFEKLIDKSMLFLVEKKFPNSYVNDGYFKVKRVCDVPELIRMYLRGQFFRLHHTTRDTVAKLLGVEGPVLHSNNAHESSHASALAVDNFSTTASDIAQASSSNSVSFNNQNIGITPNIPVEESDVEPVDKHCLDSTP. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07350 526 Gene3D - 126 253 IPR012340 -
Seca4g07350 526 MobiDBLite consensus disorder prediction 512 526 - -
Seca4g07350 526 Gene3D - 6 111 IPR012340 -
Seca4g07350 526 CDD RPA1_DBD_A_like 24 110 - -
Seca4g07350 526 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Seca4g07350 526 Gene3D - 279 425 IPR012340 -
Seca4g07350 526 SUPERFAMILY Nucleic acid-binding proteins 280 410 IPR012340 -
Seca4g07350 526 CDD RPA1_DBD_B_like 143 242 - -
Seca4g07350 526 SUPERFAMILY Nucleic acid-binding proteins 137 257 IPR012340 -
Seca4g07350 526 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Seca4g07350 526 MobiDBLite consensus disorder prediction 505 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07350 Seca-Chr4 164542567 164545281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07350 42 375 Core DNA Replication Machinery Family AT5G08020 21.229 4.26e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07350 - - mtr:11425976 256.144