Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07328 ATGCAACAAGGAATCTTTGGAGAAGATACCCGCTATGGTTTCACTGGCAATCTCTACCATGCCCTGCAACAGAGGGGAATCAACACTTTCATGGATGATGAAGTGATTCAGAGCGGTGAACAAATTTCACCTGCTAATTTCAAAGCCATTGAAGAGTCTAGGATTGCCATAATTGTGTTCTCTAAAACCTATGCATCCTCCAAATGGTGCCTTGAAGAACTTGTCAAAGTCCTTGATTGTTTCAGAGCCAAGGAACGCATGGTTTATCCTGTATTTTACAACGTGGATCGATCAGAGGTACGACATCAGAGAGGAAGTTATGGAGAACAATTGGCCATGCATGAAGAGAAAATGAAGGATGACAAACAGAAAGTGCAAAGCTGGAGGGTGGCTCTGTATGAGGCAGCCAATCTGGAAGAAAAATCAATAGATGAATGGGAGTTTGTGTTAGACAGATATGAACAAGTTCGCAATGAGGACTTTCAGACTATACTTAAAGTGAGTTATGATAGTTTGAATGAATGTGAGAAGAGAATTTTTGACATTGCATGCTTCTTCACTGGAGAGCCATTTCCATATGTTGAAGGAATACTATCTGCTTGTGGTTTCTATCCTAACTATGGTATTAGTAGACTTATGGATAAGACTCTCATATCTGTCAGTCCCAGTGGAAGATTGATGATGTATGACCATATAATAGACATGGCTTTGAAAATAGTACAACAAGAATCACCCATGCATCCTGGAAATCGAAGCAGGTTATGGTTACCTGAGGATGTTCTTCAAGTTTTAGATGAAAATGTGTTGAAGTCATTATTGGACAACTTACCACAAGAAAATGCAGTAAAATTGAGTGGCAAAGTCTTCAAAAAGATGGCAAGCCTGAGAACACTAATTATTAAGGATGGGATATACTCTGAAATCTTCCAACATCTCCCAAATAGCTTAAGAGTTCTGGACTGGAGCGGATTTCCTTCATGGTGTTTACCACCTGATTTTATCAACTTGCCTTCTAATTGTCTCATTTTGAACAAGTTCAAGAATATGAAGAGTTTGACTAGAATGGATTTCACTGATTGTAAATTTCTGTCAGAAGTACCTGATGTGTCTGGTGTCCCAAACTTAAGCACATTGTATCTTGGTAACTGTATAAATATGGTCAAAATTCATGATTCTGATGGATTTCTTTGTAATCTTGAAGAGCTGACTGCCACAGGATGCATCATTCTAAAAACAATTCCATTTACATTCAAGTTGGCATCTCTAAGAGTTCTCACTTTCTCTGAGTGCTCAACACCCATGAGGCTTGATAAGCTACCCAGTAGCATTTTTACATTGCCAAGACTTCAGGAAATTCAAGCTGACTCCTGTAAAGGGTATGGCATTTCTATTGAGTGTGAAGATCATGGACAATTGAATTTCACTGTGTCTCCAAACAAGATTCCTCGGTATCTGAGCTTTTGCGATTTAACAGATGAACATCTTCATATATGTCTCAGCAGTTTTGCTAATGTGGTTCATTTGGACATATTCAATAATTTCACAGTCCTTCCAGCATGCATTACATAA 1569 0.3856 MQQGIFGEDTRYGFTGNLYHALQQRGINTFMDDEVIQSGEQISPANFKAIEESRIAIIVFSKTYASSKWCLEELVKVLDCFRAKERMVYPVFYNVDRSEVRHQRGSYGEQLAMHEEKMKDDKQKVQSWRVALYEAANLEEKSIDEWEFVLDRYEQVRNEDFQTILKVSYDSLNECEKRIFDIACFFTGEPFPYVEGILSACGFYPNYGISRLMDKTLISVSPSGRLMMYDHIIDMALKIVQQESPMHPGNRSRLWLPEDVLQVLDENVLKSLLDNLPQENAVKLSGKVFKKMASLRTLIIKDGIYSEIFQHLPNSLRVLDWSGFPSWCLPPDFINLPSNCLILNKFKNMKSLTRMDFTDCKFLSEVPDVSGVPNLSTLYLGNCINMVKIHDSDGFLCNLEELTATGCIILKTIPFTFKLASLRVLTFSECSTPMRLDKLPSSIFTLPRLQEIQADSCKGYGISIECEDHGQLNFTVSPNKIPRYLSFCDLTDEHLHICLSSFANVVHLDIFNNFTVLPACIT. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07328 522 Gene3D Ribonuclease Inhibitor 250 522 IPR032675 -
Seca4g07328 522 SUPERFAMILY "Winged helix" DNA-binding domain 161 264 IPR036390 -
Seca4g07328 522 SMART till_3 2 138 IPR000157 GO:0007165
Seca4g07328 522 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 138 IPR035897 -
Seca4g07328 522 SUPERFAMILY L domain-like 250 513 - -
Seca4g07328 522 Pfam TIR domain 7 142 IPR000157 GO:0007165
Seca4g07328 522 Gene3D - 6 175 IPR035897 -
Seca4g07328 522 ProSiteProfiles TIR domain profile. 1 135 IPR000157 GO:0007165
Seca4g07328 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 142 463 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07328 Seca-Chr4 164079783 164081890 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07328 113 446 WRKY Transcription Factor Family AT5G45050 29.315 8.42e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07328 - - gmx:100796191 496.123