Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07325 ATGCTCAGATGGACAGAGCAAGTGAAGATTTGCTCAAAAACAAGACTTGTGGGGTCATTGGATGATGGATATAGTTGGAGAAAATATGGGCAAAAAGATATTCTTGGAGCTAAGTTTCCTAGGTTACAACCTCTATTCCCATTTAACTTCTTGTTATAA 159 0.3711 MLRWTEQVKICSKTRLVGSLDDGYSWRKYGQKDILGAKFPRLQPLFPFNFLL. 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07325 52 ProSiteProfiles WRKY domain profile. 15 41 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07325 52 SMART WRKY_cls 20 52 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07325 52 Gene3D WRKY domain 7 44 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g07325 52 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 41 IPR044810 GO:0003700
Seca4g07325 52 SUPERFAMILY WRKY DNA-binding domain 18 41 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g07325 52 Pfam WRKY DNA -binding domain 21 41 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07325 Seca-Chr4 164069711 164069869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07325 1 41 WRKY Transcription Factor Family AT5G24110 63.415 1.52e-14 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g07325 WRKY 4.1e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07325 - - gmx:100127387 81.6481