Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07324 ATGGAAATGGAGCAACGAGTGCTTCCTTCTTCCAAGGGTGGGTTCACTTATGATGTTTTCCTCAGTTTTAGAGGAGAAGATACCCGCTATGGTTTCACTGGAAATCTCTACCATGCCCTGCAACAAAGGGGAATCAACACTTTCATGGATGATGAGGTGATTCAGAGAGGTGAACAAATTTCACCTGCTATTTTCAAAGCCATTGAAGAGTCTAGGATGGCCATAATTGTGTTTTCTAAAAGCTATGCATCCTCCAAATGGTGCCTGGAAGAACTTGTCAAAATCCTTGATTGTTTCAGAGCCAAGGAACGCGTGGTTTATCCCGTGTTTTACAACGTGGATCCATCAGAAGTACGACATCAGAGAGGAAGTTATGGAGAACAATTGGCCATGCATGAAGAGAAAATAAAAGATGACAAACAGAAAGTGCAAAGCTGGAGGGTGGCTCTATATGAAGCAGCCAATCTGGCAGGGTGGCCTTTTAGAGATGGATACGAATATGAATATCAATTTATCAGACGGATCATTGACGAGGTGTCCAGTACATTAAAATGCAATATTTTACATTATGATGAATATGCAATAGGACTAGAGTCCCGTGTAACCAAAATAATATTCCGTTTGCAAATCTTAGATCCCACTGTCATCATGGTAGGAATATGTGGAGTTGGTGGAATAGGCAAAACTACTTTGGCGAGAGCTGTGTATAATTCCATTGGCCAACAGTTTGAAGGTTTATGCTTTCTCGGCGATGTTAGAGGAAATTCAACCAAATATGGGTTAGCATATCTCCAAGAGGTAATTCTTTCTGATACAGTTGGTGAGAATATCAAGTTGTATAATGAGCATGAAGGAATTCCAATCCTAATTAGAAAGTTGCAAGATAAAAGGATTCTTTTGATACTTGATGATGTGGACAAGTTGGAGCAATTGAAGAATTTGGCAGGAGCATGTAGTTGGTTTGGTTGTGGCAGTAGGATTATCATAACTACCAGGTATAAAGATATTCTAGCTGCTCATGGAGTTGGAAATATATATGATGTACCTAAATTAGATTATTTTGAAGCTCTTCAACTTTTAACTTCCAATGCATCTGAAAGACTTTACTCTGATGCAATCTGGAAACGTGCAATCTCCTATTCCAATGGCCTTCCATTGGTTTTGAAGGCTATAGGTTCTGATTTATTAGAAAAATCAACAGATGAATGGGAGTTTGCGCTAGACAGATATGAACAAGTTCGCAATGAGGAAATTCAGACTATACTTAAAGTGAGTTATGATAGTTTGAATGAATGTGAGAAGAGAATTTTCCTTGACATTGCATGCTTCTTCACTGGAGAGCCATTGCCATGTGTTGAAGGAATACTATCTGCTTGTGGTTTCTATCCAAACTATGGTATTAGCAGACTTATGGATAGGTCTCTCATATCTGTCAGTCCCAGTGGAAGTTTGATGATGCATGACCATATAATAGACATGGCTTTGAAAATAATACAAGAAGAATCGCCCATGCATCCTGGCAATCGAAGCAGGTTATGGTTACCTAAGGATGTTCTTCAAGTTTTAGATGAAAATGTGGTAACTGATAAAGTTGAAGTCATGATGTTGGACAACTTACCGCAAGAAAATGCAGTGAAATTGAGTGACAAAGCCTTCAAAAAGATGGAAAGCCTGAGAATACTAATTATTAAGGATGCGATATATTCTGAAATCTTTCAACATCTCCCAAATAGCTTAAGAGTTCTGGACTGGAGCGGATACCCTTCATGGTGTTTACCACCTGATTTTATCAACTTGCCTTCTAATTGTCTCATTTTGAACAAGTTCAAGAATATGAAGAGTTTGACTAGAATGGATTTCACTGATTGTAAATTTCTGTCAGAAGTACCTGATGTGTCTGGTGTCCCAAACTTAAGGACATTGTATCTTGATAACTGTATAAATGTGGTCAAAATTCATGATTCTGTTGGATTTCTTTGTAATCTTGAAGAGCTGACTGCCACAGGATGCATCAATCTAGAAACAATTCCATTTACATTCAAGTTGGCATCTCTTAGAGTTCTCTCTTTCTCTGAGTGCTCAAGACTCATGAGGTTTCCAGAAATATTGTGCAGAATAGATAATTTAAGGCATGTCAACTTGTGGCAAACTGCCATAGAGGAATTACCATTTTCAATTGGAAATCTGGCAGGGCTTGAAGTTTTAACTCTTATGGATTGTACTAGGCTTGATAAGCTACCCAGTAGCATTTTTACATTGCCAAGACTTCAGGAAATTCAAGCCGACTCCTGTAAAGGGTTTGGCATTTCTATTGAGTGTGAAGATCATGGACAATTGAAATTCACTGTATCTCCAAACAAGATTCGTCTGTATCTGAGCTCTTGCAATTTAACAGATGAACATCTTCATATATGTCTCAGCGGTTTTGCTAATGTGGTTTATTTGGACATATCATACAATAACTTCACAGTTCTTCCAGCATGCATTAAAGAGTGTATCCACTTGAAGACTCTTCTGCTAACAAACTGCAAGCAGCTTCGAGAAATTTCAGTGGTTCCCCCAAAATTGCAAGACATAGAAGCATTGAACTGCACATCATTGACATCCCAATCATCAAGTGTACTACTGAACCAGGTTTCCTCTTTGATGTTTCCTGTTTGA 2661 0.3841 MEMEQRVLPSSKGGFTYDVFLSFRGEDTRYGFTGNLYHALQQRGINTFMDDEVIQRGEQISPAIFKAIEESRMAIIVFSKSYASSKWCLEELVKILDCFRAKERVVYPVFYNVDPSEVRHQRGSYGEQLAMHEEKIKDDKQKVQSWRVALYEAANLAGWPFRDGYEYEYQFIRRIIDEVSSTLKCNILHYDEYAIGLESRVTKIIFRLQILDPTVIMVGICGVGGIGKTTLARAVYNSIGQQFEGLCFLGDVRGNSTKYGLAYLQEVILSDTVGENIKLYNEHEGIPILIRKLQDKRILLILDDVDKLEQLKNLAGACSWFGCGSRIIITTRYKDILAAHGVGNIYDVPKLDYFEALQLLTSNASERLYSDAIWKRAISYSNGLPLVLKAIGSDLLEKSTDEWEFALDRYEQVRNEEIQTILKVSYDSLNECEKRIFLDIACFFTGEPLPCVEGILSACGFYPNYGISRLMDRSLISVSPSGSLMMHDHIIDMALKIIQEESPMHPGNRSRLWLPKDVLQVLDENVVTDKVEVMMLDNLPQENAVKLSDKAFKKMESLRILIIKDAIYSEIFQHLPNSLRVLDWSGYPSWCLPPDFINLPSNCLILNKFKNMKSLTRMDFTDCKFLSEVPDVSGVPNLRTLYLDNCINVVKIHDSVGFLCNLEELTATGCINLETIPFTFKLASLRVLSFSECSRLMRFPEILCRIDNLRHVNLWQTAIEELPFSIGNLAGLEVLTLMDCTRLDKLPSSIFTLPRLQEIQADSCKGFGISIECEDHGQLKFTVSPNKIRLYLSSCNLTDEHLHICLSGFANVVYLDISYNNFTVLPACIKECIHLKTLLLTNCKQLREISVVPPKLQDIEALNCTSLTSQSSSVLLNQVSSLMFPV. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07324 886 Gene3D Ribonuclease Inhibitor 519 694 IPR032675 -
Seca4g07324 886 SMART AAA_5 214 352 IPR003593 GO:0016887
Seca4g07324 886 SUPERFAMILY L domain-like 537 882 - -
Seca4g07324 886 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 185 - -
Seca4g07324 886 SMART till_3 16 156 IPR000157 GO:0007165
Seca4g07324 886 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 778 IPR044974 GO:0006952
Seca4g07324 886 Pfam TIR domain 17 183 IPR000157 GO:0007165
Seca4g07324 886 Gene3D Ribonuclease Inhibitor 695 883 IPR032675 -
Seca4g07324 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 440 IPR027417 -
Seca4g07324 886 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Seca4g07324 886 Gene3D - 15 183 IPR035897 -
Seca4g07324 886 SUPERFAMILY "Winged helix" DNA-binding domain 417 522 IPR036390 -
Seca4g07324 886 Pfam NB-ARC domain 198 432 IPR002182 GO:0043531
Seca4g07324 886 Gene3D - 351 430 IPR042197 -
Seca4g07324 886 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 159 IPR035897 -
Seca4g07324 886 Gene3D - 184 342 IPR027417 -
Seca4g07324 886 PRINTS Disease resistance protein signature 680 696 - -
Seca4g07324 886 PRINTS Disease resistance protein signature 292 306 - -
Seca4g07324 886 PRINTS Disease resistance protein signature 217 232 - -
Seca4g07324 886 PRINTS Disease resistance protein signature 381 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07324 Seca-Chr4 164054805 164060732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07324 17 875 WRKY Transcription Factor Family AT4G12020 28.443 4.24e-78 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07324 - - gmx:100796191 1258.43