Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07316 ATGAATGCTTCTCATTATGAGCCTTTATATATAGAAAATGACAATGTTTGGTCATTGATTCCGGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAATGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGCAAAATCGGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTTTTCCCAGATAAAAAGCCTCTGATCCTTGCACTAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGTGGTCGTGAAGACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTAGATTACCTTGAAAAGATTAAAAAATGGCATCTACACCCCAGTGTTCTGATCATGGGGTATACTTCATTTTTATCACTAACAAGAGATAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCATTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGCTGAGGAAAGGTTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGAACATTATTTCAGAATAATTTTAGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAACTCCAGATAAAGCGAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGGACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACGTAACTGATGTGCAAAATGAGCTTTTGGAGAAACTACAAAAGAAAATGGCTGGGTCAAGCATGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTTGAATAAGTTTTACACTTCACAAGTGAGATTTATTTTGAGCCTTATTATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCACAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTAAGGAGTGCCTCGAATGGAAAGAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAATAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCAAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTAGCCAAGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATTGAGGAAGATAAGTATCGCAGAACCACTTGGAAAGAGTGGATTTCCAACATGATTTTCAGTGAGGAGTTTGCGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTGAGGGAAATGGTTGAGAATGACAATCCTAAAGTAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1725 0.3838 MNASHYEPLYIENDNVWSLIPELSKKMHDHQKKCFQFIWQNIAGSIQPTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILALKTTLYTWYKEFSKWEIPIPVYLIRGREDLRDFDETPLTIPGVPNPTGDVKHVLDYLEKIKKWHLHPSVLIMGYTSFLSLTRDNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFSEYFNTLCLARPKFVQEVLKELDTKQKKGNDKTPDKAKHLLETRARKFFLDDIANKIDSSDDEVRMQGLDMLRKITSGFIDVYESGNSDKLPGLQIYTLLMNVTDVQNELLEKLQKKMAGSSMFPLEGELMVTLGSIHPWLIKTATSLNKFYTSQVRFILSLIIRVVKEEKVLIFCHNLAPMKLLVQLFKECLEWKEGGEILLLYGEQDLFEIGKVIDKFEDPCISLTAASRLIFLDSEWNPSKIKQAIARAFRPSQEKMVYVYQLLAKGSIEEDKYRRTTWKEWISNMIFSEEFAENPSQWQAEKIEDDILREMVENDNPKVIHMIMKNEKASTN. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07316 574 Gene3D - 7 291 IPR038718 -
Seca4g07316 574 Pfam SNF2-related domain 32 280 IPR000330 GO:0005524|GO:0140658
Seca4g07316 574 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 573 IPR044567 GO:0080188
Seca4g07316 574 Gene3D - 330 574 IPR027417 -
Seca4g07316 574 CDD SF2_C_SNF 394 505 - -
Seca4g07316 574 SMART ultradead3 23 263 IPR014001 -
Seca4g07316 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 557 IPR027417 -
Seca4g07316 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca4g07316 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07316 Seca-Chr4 163911775 163913598 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g07316 SNF2_N 3.7e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07316 K10875 - gmx:100811703 819.69