Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07314 ATGAATACTTCTCATTATGAGCCTTTATATATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAAAAGAAAAGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACCTATGGAAGCAAAATCTAAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTGTTGCCTTTCTTGTTAGCTACTTAAAGCTTTTCCCAGATAAAGAGCCTCTGATCCTTGCACCAAAAATTCCAAACCCCACTGGTGATGTCAAGCATGTTTTAGATTGCCTTGAAATGGTTAAAGGTTTGAACATTTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTAACAAGCTTCCTGGTTTCCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAAAATGAGCTTTTGCAGAAACTACAAAAGAAAATGGCTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATCGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGTAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAATCAGCTAGAGATGCTCAAGTCTGATTTCAGGGTAAGGTCAAAAGTGAGATTTATTTTGAGCCTTATTATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTACACCTACGAAGCTTTTAGTACAATTGTTTGAGGAGTACTTCAAATGGAAAGAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTAAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGAAGTGGAATCCATCAAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCTTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTATCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACACGATTTTCAGTGAGGATTTTGCGGAGAACCTTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTGAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1257 0.3866 MNTSHYEPLYIENDNVWSLIPELSKKMHDHQKKSFQFIWQNIAGSIQPTPMEAKSKRRGGCVISHTPGAGKTFLVVAFLVSYLKLFPDKEPLILAPKIPNPTGDVKHVLDCLEMVKGLNILRKITSGFIDVYESGNSNKLPGFQIYTLLMNLTDVQNELLQKLQKKMAGSSVFPLEGELIVTLGSIHPWLIKTVTSSNKFYTSQELNQLEMLKSDFRVRSKVRFILSLIIRVVKEEKVLIFCRNLTPTKLLVQLFEEYFKWKEGGEILLLYGEQDLFERGKVIDKFKDPCGVSKVLLASITACAEGISLTAASRLIFLDSKWNPSKIKQAIARAFRLGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNTIFSEDFAENLSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKASTN. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07314 418 CDD SF2_C_SNF 213 349 - -
Seca4g07314 418 SMART helicmild6 253 338 IPR001650 -
Seca4g07314 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 97 IPR027417 -
Seca4g07314 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 397 IPR027417 -
Seca4g07314 418 Gene3D - 141 418 IPR027417 -
Seca4g07314 418 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 114 417 IPR044567 GO:0080188
Seca4g07314 418 Gene3D - 7 98 IPR038718 -
Seca4g07314 418 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 224 389 IPR001650 -
Seca4g07314 418 Pfam Helicase conserved C-terminal domain 221 338 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07314 Seca-Chr4 163890722 163892543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07314 264 373 RAD5 or RAD16-like Gene Family AT5G05130 37.838 1.03e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07314 K10875 - gmx:100811703 427.557