Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07312 ATGTTGAAGAAAATCACAAGTGGTTTTATCGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGATTTGCAAAAACTACAAAAGAAAATGGCTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCAGAGGAACTAAATCAGCTAGAGAAGTTCAAGTCTTATTTTAGTGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATTATTCGTGTTATCAAGGAGGAGAAGGTTTTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAGAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTATTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAATTTTAAAGGTACTCCTTGCTTCAATTACAGCTTGTGTTGAAGGTATTAGTCTTACCGCAACTTCTCGGTTGATATTTTTGGTCTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGGAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTAA 669 0.3886 MLKKITSGFIDVYESGNSDKLPDLQKLQKKMAGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSEELNQLEKFKSYFSVGSKVRFILSLIIRVIKEEKVFIFCRNLAPMKLLVQLFEECFKWKEGGEILLLYGEQDLFERGKVIDKFEDPCGILKVLLASITACVEGISLTATSRLIFLVSEWNPSKIKQAIGRAFRPGQEKMVYVYQLLAKGSMEEDK. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07312 222 CDD SF2_C_SNF 82 213 - -
Seca4g07312 222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 88 222 IPR001650 -
Seca4g07312 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 221 IPR027417 -
Seca4g07312 222 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 222 IPR044567 GO:0080188
Seca4g07312 222 SMART helicmild6 113 202 IPR001650 -
Seca4g07312 222 Gene3D - 13 222 IPR027417 -
Seca4g07312 222 Pfam Helicase conserved C-terminal domain 85 201 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07312 Seca-Chr4 163840432 163841151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07312 128 220 RAD5 or RAD16-like Gene Family AT5G05130 40.000 5.47e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07312 K10875 - gmx:100781856 288.115