Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07302 ATGGAAAACATGGAAGAGAGAAGTTTTTCTGAATTGCTGTTACAGCTGATAGTTTTGGCTGATGAGGTTGCTTCTTTTGCTAAGAACTCTGAAATTGAGGTAGATGTTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTGCCACCAATCTTGAATGACTTGATGGATAAAAGCACAGTCTTGGACAAGCCACCAATTAGAAAATCGTTGGGATCTCTTGAGAATGAACTAAGGCGTGCTAAAGCTCTAACAAAAAGCTCCAATTTGAGACAACCCATCAAACAAATTGAGGACATAACACATGATATTGGTAGATCATTGGGCCTTCTGCTTGTAGCCAGCCTTGAGGTGTCCACGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAGTTGATGAGTGTAAGATTTGATAGCAATTCTAGTCTAACTTCAAGTCCAAAATCAGAATTTATCAGCAGTGACACGAAGGGGAATGATGAAATAGAAGAGGAAATAGTCAATGTTTCTATTGATGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTGCACTTTTGAGACTAAAGGAGTTCATTAGGAGTGAAAAGCTGGATGGTGGGTTGATTAATGAGGAAGCAACTATTACCATTCTTTTCAAACGTCTAGGTTCGTGTAAGGCAGACAATAGGCTGGCCATCATTCGATTGCTAAGAAGTATTGCTTTTGGAAATGATGAGAAAAAGGAGAAGATGGCAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCTCTAACAAGAGATTCAGAAGAGAGGAAGGAAGCAGTGGGGCTGTTGCTGGATCTTTCTGATATTCCTGCAGTTCGAAGGCGGATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTTCCATCCTCAATGGGGATGACCATGTTGCTTCACATGATGCAGCAAAGTTATTGGATATGTTGTCTAGTAATACTCAAAATGCGCTTCATATGGCTGAGGCTGGCTACTTTAGGCCACTAGTACAGTATTTGAAGGAAGTAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCTAGGTTGGAGCTCACTGATCACAGCAAACATGTCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGCCAAAATGTTTAATACTGGGAAACTTGAGTCCAAGTTATCAGCTTTAAATGCACTACAAAATCTGTCTAGCATGACTGAAAATGTGCAACGTTTGATCAGGTCTGGAATTACAGGATCTCTGCTACAGCTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTGAGGGAACCTGCATCAGCTATTCTTGCAAGAATTGCTCAGTCAGAATCCATTCTTGTTAATGAAGATGTGGCTCAACAGATGCTTTCACTTTTGAATCTTTCCAGTCCTGTAATTCAAGGTCATCTATTAGAAGCTCTGAATAGCATGGCTGCCCATCCTGGTGCATCCAAAGTGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAGCTACTCTTACCCTTTCTGAAGGAAAATAATACCAAAATCCGGAGTAAGGTCTTGCATTTGTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTGACTGAATATCTTGATGAACCTCATCTTTTTAACATTGTTAATATTGTCTCGTCATCAACTTCAGAGAGTGAAAAAGCTGCTGCTGTTGGCATATTGAGTAATCTTCCTGCTAGTGATAAAAAACTTACAGATATACTGAAGAGGGCAAATTTGCTGCCCATTTTGATATCCATTGCTTATTCTAGCACAGGAAGTAATTCACCCACAACAAATAGCTTAGCAGAGAGTATTGCAGGTGTTATTCTCCGCTTCACAAATTCCTCTGACAAGAAACTACAACTTCTTTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAATTGCTCTCTAGTGGTTCGCCAATCACAAAATCAAAGGCTGCAAACTCTCTGGCTCAGCTATCACAGAATTCTCTGTCTCTTAGGAAGTCTAGAAAGTCAAGGTGGTTGTGTGCTCCACCCTCAATGAATGCATATTGTGAAGTTCATGATGGCTACTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTGCTCCACTTATCCAAATATTGGAAGATAAGGAGAGGGAAGTAGTTGAAGCTGCTCTGAGTGCCCTTTCAACTCTTTTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCATTGTCAAATTGTCAGGTGTGCAGGCTATTATAAGAAGTTTAGAAGTTGGAGATGCAAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTAAAATATGGAGAATCTGCTCAGGTGGTTCTTATTGATTTGGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGCTGGAGCTCTTGCAATCTCAATCAAGTTACTTTTGA 2496 0.4018 MENMEERSFSELLLQLIVLADEVASFAKNSEIEVDVFAEFAMLVEKLPPILNDLMDKSTVLDKPPIRKSLGSLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSLGLLLVASLEVSTDFREKIGTLQRQLMSVRFDSNSSLTSSPKSEFISSDTKGNDEIEEEIVNVSIDDVVLQLKNGNDEEFAVALLRLKEFIRSEKLDGGLINEEATITILFKRLGSCKADNRLAIIRLLRSIAFGNDEKKEKMADIEFLSAVVKSLTRDSEERKEAVGLLLDLSDIPAVRRRIGRIQGCIVMLVSILNGDDHVASHDAAKLLDMLSSNTQNALHMAEAGYFRPLVQYLKEVGSDMNKILMATALSRLELTDHSKHVLGEDGAIEPLAKMFNTGKLESKLSALNALQNLSSMTENVQRLIRSGITGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPVIQGHLLEALNSMAAHPGASKVRRKMKEKGALQLLLPFLKENNTKIRSKVLHLLYTLSKDLTDELTEYLDEPHLFNIVNIVSSSTSESEKAAAVGILSNLPASDKKLTDILKRANLLPILISIAYSSTGSNSPTTNSLAESIAGVILRFTNSSDKKLQLLSAEHGVIPLLVKLLSSGSPITKSKAANSLAQLSQNSLSLRKSRKSRWLCAPPSMNAYCEVHDGYCFVNSTFCLVKAGAVAPLIQILEDKEREVVEAALSALSTLLQDEIWEGGVNSIVKLSGVQAIIRSLEVGDAKVQEKALWMLERIFRVEEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07302 831 Gene3D - 185 312 IPR011989 -
Seca4g07302 831 SUPERFAMILY ARM repeat 354 786 IPR016024 -
Seca4g07302 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 419 IPR000225 GO:0005515
Seca4g07302 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 710 737 IPR000225 GO:0005515
Seca4g07302 831 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 176 831 - -
Seca4g07302 831 Gene3D - 314 679 IPR011989 -
Seca4g07302 831 Pfam Armadillo-like 263 463 IPR006911 -
Seca4g07302 831 SMART arm_5 492 532 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 324 365 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 407 450 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 627 667 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 699 739 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 242 281 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 743 783 IPR000225 GO:0005515
Seca4g07302 831 SMART arm_5 366 406 IPR000225 GO:0005515
Seca4g07302 831 SUPERFAMILY ARM repeat 170 428 IPR016024 -
Seca4g07302 831 Gene3D - 690 829 IPR011989 -
Seca4g07302 831 Pfam Armadillo/beta-catenin-like repeat 705 737 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07302 Seca-Chr4 163569578 163574595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07302 181 831 U-box Gene Family AT1G20780 28.967 6.16e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07302 K08332 - gmx:100791453 1299.65