Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07294 ATGAATTTTGATAAAATGGACATAAAATCTGGTAACCAAGGCAAACAAACCATCATAAAGGCAATGCAGGCATACAAGGTCCTCATATTGACGCTGTACTCTTTCTTTTTCTGCTTCATTACCCCTTTATCTATACAAGGCACTGTTACTATTACTCCAAATCAGTCTATTCAAGGTAATGAGACCCTGGTCTCTATAGCTGGGACTTTTGAAGCTGGATTCTTCAACTTTGGAAATTCACAACGCCAATACTTTGGTATATGGTACAAGAACCTATTACCTAGGACTTTTGTTTGGGTTGCCAATAGAGATGCCCCAGTACAAAACTCAATAGCAATTCTGCAACTTACTCATCAAGGAAATCTTGTTATTGTTGATGGCTCTAGGGGTATTGTGTGGTCTTCCTCCAATGCATCAAGAATTGCTCAGAAACCAGTGATGCAGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAATTTTTTGTGGGAAAGTTTTGATTACCCTGGTAATACTTTCCTTGCAGGAATGAAACTTAGGACAAATTTGGTTACTGGTCCTTATAGGTCTCTCACATCTTGGAAAAGCACAGAAGATCCTGCTGTTGGTGAGTTTTCATATCACATAGATGCTCGTGGCTTTCCTCAATTAGTTACTACAAAAGGAGCAACTTTATATAGCAGAGGAGGGTCATGGAATGGCTTTATTTTTAATGGAGTTTCATGGCTAAGAATGCTTAAATTGTTCAATTTTTCTTTAGTGTTTACTGACAAGGAAGTCTCTTACGAGTATGAAACATTAAGCAATGAAACTGTTACTATATTAGTGCTCAATCCATCAGGTTTTGTACAACGGTTGATATGGTCAGATAGGAAAGGAAGTTGGGAGATTATATCTACTCGTCCAATGGATCAGTGTGAATATTATTCCCATTGTGATGCTAATTCTGTATGCAATATTACTAACTCCCCAAAGATATGTCAATGCTTGGAAGGTTTCATACCAAAATTCCAAGAAAAGTGGAATTTATCAGATTGGTCTGGTGGGTGTGTTAGAAGAATAAGCTTAAATTGTCATAATGATGGGTTTGTGCAGTACACAGGAATGAAATTGCCAGATACATCATCTTCCTGGTTTGACCAGAGCTTGAGCCTTGAGAAATGTGAGACATTGTGTTTGAAAAATTGCTCTTGCACAGCATATGCAAAATCAGATATCACTGGTGAGAGTGGCTGCTTACATTGGTTTGGTAACATTCTGGACTTGACAAAACACACAGACCAAGGACAAGATATTTTCATACGAGTTGCAGCTTCAGTGTTAGCTTGTTTGTTGACTAGAATGCTTTACCATTCCTCAGATCATAGAAGGGATAAGAGCAGCTTTAATAACAAGAAGCTTGCAGGGACACTAGTAGGAATTGTTATATTCATCATGGTTCTTGTACTGGTCATATTCACATATATAAAGAGGAAGAAGCTAGCAAAGCCAGGTGAATTTATGGAAAGGATGTTAAAAATATTTCACTGGAAGTACAAAAGGGAGAAGGAAGACGTGGAGTTATCAACAATATTTGATTTTTCAACCATCTCTAATGCCACATATCACTTCTCAGAAAGTAACAAGTTAGGACAAGGTGGCTTTGGACCAGTGTACAAGGGAATTTTAGAAGATGGACTAGAGATTGCAGTAAAGAGGCTATCAAAAACTTCTGATCAAGGAGCAGAGCAGTTCAAAAATGAAGTAATGTTGATGGCGAAACTGCAGCACCGAAACCTTGTAAAACTTCTTGGTTGTTCTATTCATCAAGATGAAAAGCTTTTGATCTATGAATTCATGCCAAACAGAAGCTTGGATTACTTTATTTTTGATTCAACTCGAAGTAAACATCTAGACCTGACAAAACGCTTTCAAATTATTGATGGGATTGCTCGAGGGCTACTTTATCTTCATCAAGACTCTAGATTAAGAATCATCCACAGAGACCTCAAGACCAGTAATATTCTTCTTGATAACAATATGAACCCAAGGATATCAGATTTTGGTTTGGCTAGAACATTTGGAGGAGATCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCATTGCATGGATCTTTTTCAATCAAATCAGATGTGTTCAGCTTTGGTGTAATTGTACTGGAGATAATTAGTGGGAGAAAGAATAGGAATTTTTATGATCCTCAGCACCATCTTAATCTTCTTAGTCATGCATGGAGATTGTGGATTGAACAAAAGCAACTAGAGTTAATGGATGACTTATTCCATGGAAAAACCACTCCACCTGAAATATTGAGATGTATTCATGTGGGTCTACTATGTGTGCAACAAATACCAGAAAATAGGCCAAACATGTCATCAGTGGTTCTAATGTTGAATGGTGAAAAATTGTTGCCTGAGCCAAGCCAACCTGGGTTCTACACAGGAACAGATCATCATCCAATTCAAGTAGAATCTTCTTCAAGAAGTTGTGGAGATTTTTCACAAAATGACGCTTCTTTATCGTTGTTAGAGGCAAGATAG 2577 0.3764 MNFDKMDIKSGNQGKQTIIKAMQAYKVLILTLYSFFFCFITPLSIQGTVTITPNQSIQGNETLVSIAGTFEAGFFNFGNSQRQYFGIWYKNLLPRTFVWVANRDAPVQNSIAILQLTHQGNLVIVDGSRGIVWSSSNASRIAQKPVMQLLDSGNLVVKDGENFLWESFDYPGNTFLAGMKLRTNLVTGPYRSLTSWKSTEDPAVGEFSYHIDARGFPQLVTTKGATLYSRGGSWNGFIFNGVSWLRMLKLFNFSLVFTDKEVSYEYETLSNETVTILVLNPSGFVQRLIWSDRKGSWEIISTRPMDQCEYYSHCDANSVCNITNSPKICQCLEGFIPKFQEKWNLSDWSGGCVRRISLNCHNDGFVQYTGMKLPDTSSSWFDQSLSLEKCETLCLKNCSCTAYAKSDITGESGCLHWFGNILDLTKHTDQGQDIFIRVAASVLACLLTRMLYHSSDHRRDKSSFNNKKLAGTLVGIVIFIMVLVLVIFTYIKRKKLAKPGEFMERMLKIFHWKYKREKEDVELSTIFDFSTISNATYHFSESNKLGQGGFGPVYKGILEDGLEIAVKRLSKTSDQGAEQFKNEVMLMAKLQHRNLVKLLGCSIHQDEKLLIYEFMPNRSLDYFIFDSTRSKHLDLTKRFQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDNNMNPRISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGSFSIKSDVFSFGVIVLEIISGRKNRNFYDPQHHLNLLSHAWRLWIEQKQLELMDDLFHGKTTPPEILRCIHVGLLCVQQIPENRPNMSSVVLMLNGEKLLPEPSQPGFYTGTDHHPIQVESSSRSCGDFSQNDASLSLLEAR. 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07294 858 SMART serkin_6 539 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07294 858 CDD B_lectin 54 171 IPR001480 -
Seca4g07294 858 CDD PAN_AP_plant 358 439 - -
Seca4g07294 858 ProSiteProfiles Protein kinase domain profile. 539 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07294 858 PIRSF SRK 20 858 IPR024171 GO:0004674
Seca4g07294 858 SMART blect_4 54 171 IPR001480 -
Seca4g07294 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 615 818 - -
Seca4g07294 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 503 614 - -
Seca4g07294 858 Gene3D - 45 168 IPR036426 -
Seca4g07294 858 Pfam S-locus glycoprotein domain 230 338 IPR000858 GO:0048544
Seca4g07294 858 Pfam Protein tyrosine and serine/threonine kinase 542 807 IPR001245 GO:0004672|GO:0006468
Seca4g07294 858 SUPERFAMILY alpha-D-mannose-specific plant lectins 97 202 IPR036426 -
Seca4g07294 858 ProSiteProfiles PAN/Apple domain profile. 360 439 IPR003609 -
Seca4g07294 858 Gene3D Transferase(Phosphotransferase) domain 1 615 816 - -
Seca4g07294 858 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 801 - -
Seca4g07294 858 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 44 168 - -
Seca4g07294 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Seca4g07294 858 Pfam D-mannose binding lectin 96 197 IPR001480 -
Seca4g07294 858 Gene3D Phosphorylase Kinase; domain 1 512 614 - -
Seca4g07294 858 CDD STKc_IRAK 545 812 - -
Seca4g07294 858 ProSiteProfiles Bulb-type lectin domain profile. 48 170 IPR001480 -
Seca4g07294 858 CDD TM_EGFR-like 469 498 - -
Seca4g07294 858 SUPERFAMILY Protein kinase-like (PK-like) 522 810 IPR011009 -
Seca4g07294 858 Pfam PAN-like domain 360 424 IPR003609 -
Seca4g07294 858 SMART ntp_6 360 438 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07294 Seca-Chr4 163372790 163376860 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07294 473 824 Receptor kinase-like Gene Family AT4G23230 52.394 7.79e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g07294 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07294 - - gmx:100803275 1297.72