Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07290 ATGAAAAACACAATGCACACATACAAGGTGCTTATGTTATTGCTAAAGTGGCACTCTTTCTTTTTCTTCTTCATTGCCACTTTATCTATACATAGCACTGATATTATTACTCCAAATCAGTCTATCCAAGGTAATGAGACCCTGGTCTCTATAGATGGGACTTTTGAAGCTGGATTCTTCAACTTTAGAAATTCACAAAGCCAATACTTTGGTATATGGTACAAGAACCTATCACCTAGGACTAGGACTTTTGTTTGGGTTGCCAACAGAGATGTGCCAGTACAAAACTCAACAGCAATTCTGAAACTGACTGATAATGGAACTCTTGTTATTGTTGATGGCTCTAGGGGTATTGTGTGGTCTTCCTCCAATGAATCAAGAATTGCTGAAAAACCAGTGATGCAGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAATTTTTTATGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTCCAGACATGAAACTCAGCACAAATTTAGTTACCGGTACTTATAAGTCTCTCACATCTTGGACTAGCACAGAAGATCCTGCTGTGGGTGAGTATTCATATCACATAAATGCTCATGGCTTTCCTCAACTAGTTACTACAAAGGGAGCAACTTTATTTAGCAGTGCAGGGTCATGGAATGGCTATGTTTTTGGTGGACTTTCATGGCTAAGAATGCTTAAATTGTTCAAGTTTTCTTTAGTGTTTACTGACAAGGAAGTCTCTTACAAATATGAAACATTGAAAAAAGAAACTGTTACTAGATTAGTGCTCAATCCATCAGGCATTGCACAACGTTTTAAATGGTCAGATAGGAGAGGGTGGGAGATTATAGCTTCTCGTCCCACAGATCAGTGTGAATATTATTTCTTTTGTGATGCTAATTCTATCTGCAATATCACTAACTCTCCAAAATTATGTCAATGCTTGGAAGGTTTCAGACCCAAATTCCCAAATAGATGGAATGCATTAGATTGGTCTGGTGGGTGTGTTAGAAGAATAAGGTTAAATTGTCATAGTGATGGGTTTGTGCAGTACACAGGAATCAAATTGCCAGATACATCAGCTTCCTGGTTTGGCAAGAGCTTGAGCCTTGAGAAATGTGAGACACTGTGTTTGAAGAATTGCTCTTGTACAGCATATGCAAAGTCAGATATCAAAGATAATAGTGGCTGCTTGCTTTGGTTTGGTGACATTTTGGACATGACAAAACACATAGACCAAGGACAAGATATTTTCATACGAGTTGCAGCTTCAGAGTTAGGAACGAATAAGAGGAACTTTAATAACAAGAAGCTTGCAGGGACACTAGTAGGAATTGTTATATTCATCATGGTTCTTGGACTGGTCATATTCACATATATAAAGAGGAAGAAGCTAGCAAAGCCAGGTGAATTTATGGAAAGTAACAAAATTGACTCTTTATATACTCCAATGTTAGAAAGGATGCTAAAAATATTTCACTGGAAGTACAAAAGGGAGAAGGATGATGTGGAGTTATCAACAATATTTGATTTTACAACCATCTCTAATGCCACAAATAACTTCTCAGAAAGTAACAAGTTAGGACAAGGTGGCTTTGGACCAGTGTACAAGGGCATATTAGAAGATGGGCAAGAGATTGCAGTCAAGAGGCTTTCAAAAACTTCTGAACAAGGAGCAGAGCAGTTCAAAAATGAAGTTATGTTGATGGCAAAACTTCAGCATCGAAATCTAGTTAAACTTCATGGTTGCTCTATTCATCAAGATGAAAAGCTCTTGATCTACGAATTCATGCCTAACAGAAGCTTGGATTACTTTATTTTTGATTCAACTCGAAGCAAACAACTAGATCTGACAAAACGTTTCCAAATTATTGATGGGGTTGCTAGAGGGCTACTTTATCTTCATCAAGACTCTAGATTAAGAATCATTCACAGAGACCTCAAAGCCAGTAATATTCTTCTTGATAGCAATATGAACCCAAGGATATCAGATTTTGGTATGGCTAGGACATTTGGAGATCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCATTGCATGGATCTTTTTCAATCAAATCTGATGTATTTAGCTTTGGTGTAATTGTGCTGGAGATAATTAGTGGGAGAAAGAATCGGATATTTCATGATCCTCAACACCATCTTAATCTTCTTAGTCATGCATGGAGATTGTGGATTGAAGAAAAGCCACAAGAGTTATTGGATGATTTATTCCATGGTACAACCACTCCAGCTGAAATATTGCGATGTATTCATGTGGGTCTACTATGTGTGCAACAAATACCAGAAAATAGACCAAACATGTCATCTGTGGTTTTAATGTTGAATGGTGAAAAATTATTGCCTGATGCAAGCCAACCCGGGTTTTACACAGGAACACACCATCCTCCAATTCAGGTAGAATCCTCTTCAAGAAGTTGTGGAGATTGTTCACAAAATGAGGCTTCTGTGTCTTTGTTAGAGGCACGATAG 2529 0.3784 MKNTMHTYKVLMLLLKWHSFFFFFIATLSIHSTDIITPNQSIQGNETLVSIDGTFEAGFFNFRNSQSQYFGIWYKNLSPRTRTFVWVANRDVPVQNSTAILKLTDNGTLVIVDGSRGIVWSSSNESRIAEKPVMQLLDSGNLVVKDGENFLWESFDYPGDTFLPDMKLSTNLVTGTYKSLTSWTSTEDPAVGEYSYHINAHGFPQLVTTKGATLFSSAGSWNGYVFGGLSWLRMLKLFKFSLVFTDKEVSYKYETLKKETVTRLVLNPSGIAQRFKWSDRRGWEIIASRPTDQCEYYFFCDANSICNITNSPKLCQCLEGFRPKFPNRWNALDWSGGCVRRIRLNCHSDGFVQYTGIKLPDTSASWFGKSLSLEKCETLCLKNCSCTAYAKSDIKDNSGCLLWFGDILDMTKHIDQGQDIFIRVAASELGTNKRNFNNKKLAGTLVGIVIFIMVLGLVIFTYIKRKKLAKPGEFMESNKIDSLYTPMLERMLKIFHWKYKREKDDVELSTIFDFTTISNATNNFSESNKLGQGGFGPVYKGILEDGQEIAVKRLSKTSEQGAEQFKNEVMLMAKLQHRNLVKLHGCSIHQDEKLLIYEFMPNRSLDYFIFDSTRSKQLDLTKRFQIIDGVARGLLYLHQDSRLRIIHRDLKASNILLDSNMNPRISDFGMARTFGDQAEANTNRVMGTYGYMPPEYALHGSFSIKSDVFSFGVIVLEIISGRKNRIFHDPQHHLNLLSHAWRLWIEEKPQELLDDLFHGTTTPAEILRCIHVGLLCVQQIPENRPNMSSVVLMLNGEKLLPDASQPGFYTGTHHPPIQVESSSRSCGDCSQNEASVSLLEAR. 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07290 842 SMART serkin_6 524 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07290 842 Pfam S-locus glycoprotein domain 218 325 IPR000858 GO:0048544
Seca4g07290 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 802 - -
Seca4g07290 842 ProSiteProfiles Protein kinase domain profile. 524 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07290 842 CDD STKc_IRAK 530 796 - -
Seca4g07290 842 Pfam Protein tyrosine and serine/threonine kinase 527 791 IPR001245 GO:0004672|GO:0006468
Seca4g07290 842 Gene3D - 28 155 IPR036426 -
Seca4g07290 842 SUPERFAMILY Protein kinase-like (PK-like) 508 813 IPR011009 -
Seca4g07290 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 490 599 - -
Seca4g07290 842 Gene3D Transferase(Phosphotransferase) domain 1 600 802 - -
Seca4g07290 842 Gene3D Phosphorylase Kinase; domain 1 497 599 - -
Seca4g07290 842 ProSiteProfiles Bulb-type lectin domain profile. 33 157 IPR001480 -
Seca4g07290 842 ProSiteProfiles PAN/Apple domain profile. 346 425 IPR003609 -
Seca4g07290 842 CDD B_lectin 39 158 IPR001480 -
Seca4g07290 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 785 - -
Seca4g07290 842 PIRSF SRK 4 842 IPR024171 GO:0004674
Seca4g07290 842 CDD PAN_AP_plant 344 425 - -
Seca4g07290 842 Pfam D-mannose binding lectin 83 183 IPR001480 -
Seca4g07290 842 Pfam PAN-like domain 346 410 IPR003609 -
Seca4g07290 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 155 - -
Seca4g07290 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Seca4g07290 842 CDD TM_EGFR-like 441 470 - -
Seca4g07290 842 SMART blect_4 39 158 IPR001480 -
Seca4g07290 842 SMART ntp_6 346 424 IPR003609 -
Seca4g07290 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 189 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07290 Seca-Chr4 163332947 163336779 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07290 512 809 Receptor kinase-like Gene Family AT4G23140 58.497 1.80e-122 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g07290 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07290 - - tpra:123913214 1286.17