Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07280 ATGCACTACATAAGTCGATTCATAGCGGGCTTTATCATTGGTTTTGTCAGAGTGTGGCAAATCACTTTAGTGACACTTGCAATAGTACCCTTGATTGCCCTTTCCGGTGGTCTTTTTGCATATGTGACAATTGGACTTATTGCAAATGTTAAGAAAGCATATGTGATGGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTTAGAACCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATACAAAGCGGCTCTAATGGACACATATAGGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTTTGCAATGTGTCCTTTTTCTATCATGGGCTTTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGAGAGGCTTTCACTACCATGCTTAATGTGGTGATCTCTGGCTTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCCGAGCAAAGGCAACATCTTATCCTATTTTTGAGATGATTGAGAGGGACACACCCTTGTTGGAGGAAGTGGTTCTGGAAAAAGCAGTGATATCATTAATTGAGCGCTTCTATGAACCACTTTCTGGTCAAATATTATTAGATGGGCATAATATCAAGGGACTTGATCTCAAGTGGCTTAGACAACAAATTGGGCTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATTAGGGAGAACATTTTGTATGGAAAAGACGATGTCACTATTGATGAACTAAATCATGCTCTTAACCTTTCTGATGCTCAGTCCTTCATAAGCAATCTTCCCGATGGATTAGATACTCAGGTTGGTGAGAAAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTATTAGATGAAGCAACCAGTGCTTTGGATGCAGAGTCCGAGAAGAGTGTACAAGAGGCTCTTGATTGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGAAATGCAGATATGATTGTTGTTGTTCGGGGAGGGAGTGTTGTAGAAATTGGAAACCATGAGGAGCTCATTTCCAACCCAAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGACTGACTCTTTTCAAGGCCACCCTTTTACGGATCCTTGCTTGGGGCAATCATCAAGAATAATGCACTCAGGAGAATCATCCCATGCAACAAGCATTGGTGGTAGTTTTCGTTCAGATAAAGAATCTTTTGGTGCTGATGAAGTAGCAAGTGTTGTGAAGTCAAGGCATGTCTCAACAAAAAGACTATATTCCATGATTGATCCTGACAGGTTTTATGGGGTTTTTGGAACGTTTGGTGCATTTATTGTTGGATCCCTTATGCCACTTTTTGCTCTTGGAATATCTCATTCTCTGGTAGCATATTATATGGATTGGAATACAACACGTCATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGGGCAGCAGTTGTAGCCATCATTGCCTATGCCTTTGAACATCTTTCTTTTGGAATCATGGGCCAACGACTTACCCTTCGTGTGAGAGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAGCAACACAAGTTCTATTCTTTCAGCACGTTTTGAGACTGATGCAACTTTATTACAAACTATAGTTGTTGATCGTTCTACAATTCTCTTACAAAATGTTGGTTTAGTTGTCACGTCATTTATTATTGCCTTTATTTTGAACTGGAGGATGACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCAAAAAGCAAACATGTTGGCTGGGGAGGCGGTGAGTAATATACGTACTGTAGCTGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGAGCCTTCCAAGCATTCATTCAAACGAGGCCAAATTGCTGGCATATTATATGGAATTTCACAGTTCTTTATTTTCTCATCTTATGGCCTTTCCTTATGGTATGGATCAGTCTTGTTGGAAAAGGAGCTTGCCAGCTTTAAATCAATTATGAAGGCATTTATGGTTTTAATTGTAACTGCACTGGCTATGGGGGAGACTTTGGCTTTGGCACCAGATCTTTTGAAAGGGAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACGGTAATAATGCATGATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTTAGCTACCCTTCAAGGCCAGGCGTGTTTATTTTTATTGATCTCAATCTAACAGTGCCTGCAGGAAAGAGTATTGCCTTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAATAATATCCCTTATACTCAGATTTTATGACCCAACATCTGGGAAAGTGATGATTGATGGAAAAGACATCAGGAAAATAAATTTGAAATCGCTCAAGAAACATATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACCTCAATTTATGAAAATATTCGTTATGGGAAGGAAGGAGCCTCTGATTCAGAAGTAATTGAAGCATCAAAACTTGCCAATGCTCATGGTTTTATAAGTGCTCTTCCTGAGGGCTACTCCACCAATGTAGGTGAGAGAGGAGTTCAACTATCTGGGGGCCAGAAACAAAGAGTAGCTATTTCCAGGGCTATTTTGAGAAACCCTGAAATCTTATTGCTAGATGAAGCCACCAGTGCCTTGGATATAGAGTCAGAGCGTATGGTGCAACAAGCTTTAGAAAAATTGATGCAAAACAGAACAACAGTTATGGTGGCACAAAGGCTATCAACAATAAGAAATGCATATCAAATATCAGTTTTACAAGGTGGGAAAATAATTGAGCAAGGCACCCATTCAAGTCTTATAGAGAACACAACAGGAGCTTACTTCAAACTAGTCAGCCTTCAACAACAACAACAACATATATAA 3075 0.3977 MHYISRFIAGFIIGFVRVWQITLVTLAIVPLIALSGGLFAYVTIGLIANVKKAYVMAGEIAEEVIGNVRTVQAFVGEERAVRSYKAALMDTYRNGRKAGLAKGLGLGSLQCVLFLSWALLAWFTSIVVHKNITNGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKATSYPIFEMIERDTPLLEEVVLEKAVISLIERFYEPLSGQILLDGHNIKGLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDVTIDELNHALNLSDAQSFISNLPDGLDTQVGEKGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDCVMVGRTTVIVAHRLSTIRNADMIVVVRGGSVVEIGNHEELISNPNSVYASLVQIQETDSFQGHPFTDPCLGQSSRIMHSGESSHATSIGGSFRSDKESFGADEVASVVKSRHVSTKRLYSMIDPDRFYGVFGTFGAFIVGSLMPLFALGISHSLVAYYMDWNTTRHEVKKIAFLFCGAAVVAIIAYAFEHLSFGIMGQRLTLRVREIMFSAILKNEIGWFDDTSNTSSILSARFETDATLLQTIVVDRSTILLQNVGLVVTSFIIAFILNWRMTLVVLATYPLIISGHISEKLFMQGFGGNLSKAYQKANMLAGEAVSNIRTVAAFCSEDKVLDLYANELVEPSKHSFKRGQIAGILYGISQFFIFSSYGLSLWYGSVLLEKELASFKSIMKAFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTVIMHDVGEELMTVEGTIELKRIHFSYPSRPGVFIFIDLNLTVPAGKSIALVGQSGSGKSSIISLILRFYDPTSGKVMIDGKDIRKINLKSLKKHIGLVQQEPALFATSIYENIRYGKEGASDSEVIEASKLANAHGFISALPEGYSTNVGERGVQLSGGQKQRVAISRAILRNPEILLLDEATSALDIESERMVQQALEKLMQNRTTVMVAQRLSTIRNAYQISVLQGGKIIEQGTHSSLIENTTGAYFKLVSLQQQQQHI. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07280 1024 PANTHER ABC TRANSPORTER B FAMILY 425 1018 IPR039421 -
Seca4g07280 1024 FunFam ABC transporter B family member 20 189 387 - -
Seca4g07280 1024 SUPERFAMILY ABC transporter transmembrane region 447 761 IPR036640 GO:0005524|GO:0016020
Seca4g07280 1024 Pfam ABC transporter 192 315 IPR003439 GO:0005524
Seca4g07280 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 386 IPR027417 -
Seca4g07280 1024 CDD ABC_MTABC3_MDL1_MDL2 780 1018 - -
Seca4g07280 1024 ProSitePatterns ABC transporters family signature. 919 933 IPR017871 GO:0005524|GO:0016887
Seca4g07280 1024 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 172 - -
Seca4g07280 1024 Gene3D ABC transporter type 1, transmembrane domain 1 186 IPR036640 GO:0005524|GO:0016020
Seca4g07280 1024 Gene3D ABC transporter type 1, transmembrane domain 413 756 IPR036640 GO:0005524|GO:0016020
Seca4g07280 1024 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 461 747 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07280 1024 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07280 1024 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 127 384 IPR003439 GO:0005524
Seca4g07280 1024 SMART AAA_5 189 369 IPR003593 GO:0016887
Seca4g07280 1024 SMART AAA_5 807 999 IPR003593 GO:0016887
Seca4g07280 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 1018 IPR027417 -
Seca4g07280 1024 CDD ABC_6TM_Pgp_ABCB1_D2_like 455 765 - -
Seca4g07280 1024 Pfam ABC transporter 800 947 IPR003439 GO:0005524
Seca4g07280 1024 Pfam ABC transporter transmembrane region 462 733 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07280 1024 Pfam ABC transporter transmembrane region 2 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07280 1024 FunFam ABC transporter B family member 4 770 1023 - -
Seca4g07280 1024 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 780 1016 IPR003439 GO:0005524
Seca4g07280 1024 SUPERFAMILY ABC transporter transmembrane region 4 181 IPR036640 GO:0005524|GO:0016020
Seca4g07280 1024 ProSitePatterns ABC transporters family signature. 287 301 IPR017871 GO:0005524|GO:0016887
Seca4g07280 1024 Gene3D - 192 412 IPR027417 -
Seca4g07280 1024 Gene3D - 771 1024 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07280 Seca-Chr4 163015479 163021028 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07280 1 1019 Calmodulin-binding Proteins AT2G36910 47.011 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07280 K05658 - gmx:100809752 1592.79