Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07279 ATGTCGACGTCAGAGCAAGGTTCATCCTCCGGCATAGAGGATAGGAAGAAGCCAAAGGTTCCTTTTCTCAAGCTCTTCTCATTTGCTGATTTCCATGACTATCTCTTGATGGCTCTTGGATCTGTTGGAGCCTGTGTTCATGGTGCTTCTGTCCCTGTTTTCTTTATCTTCTTTGGGAAGATAATCAACGTCATAGGCTTGGCTTACCTTTTTCCCCAACAAGCTTCACACCAAGTTGCCAAGTATGCGTTGGATTTTGTTTATCTAAGTATAATAATACTCTTCTCATCCTGGGCAGAGGTGGCTTGTTGGATGCATACTGGGGAACGCCAAGCAGCAAAGATGAGGATGGCATATTTAAGGTCAGTGTTGAATCAAGATATAAGTCTTTTTGACACACAAGCATCAACTGCAGAGGTCATTTCTTCTATTTCAACTGACATCATCGCTGTTCAAGATGCACTATCCGAGAAGGGCTCTCAGCAAGAAAACCCTAGTATTTCAATGCTATATACTTTTAGCCATATGCAACAGTTTTAA 540 0.4204 MSTSEQGSSSGIEDRKKPKVPFLKLFSFADFHDYLLMALGSVGACVHGASVPVFFIFFGKIINVIGLAYLFPQQASHQVAKYALDFVYLSIIILFSSWAEVACWMHTGERQAAKMRMAYLRSVLNQDISLFDTQASTAEVISSISTDIIAVQDALSEKGSQQENPSISMLYTFSHMQQF. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07279 179 Gene3D ABC transporter type 1, transmembrane domain 15 170 IPR036640 GO:0005524|GO:0016020
Seca4g07279 179 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 157 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07279 179 PANTHER ABC TRANSPORTER B FAMILY 5 158 IPR039421 -
Seca4g07279 179 Pfam ABC transporter transmembrane region 40 169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07279 179 SUPERFAMILY ABC transporter transmembrane region 18 158 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07279 Seca-Chr4 162999250 163001562 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07279 12 158 Calmodulin-binding Proteins AT2G36910 48.667 2.65e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07279 K05658 - gmx:100809752 251.521