Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07275 ATGCACTACATAAGTCGATTCATAGCGGGCTTTATCATTGGTTTTGTCAGAGTGTGGCAAATCACTTTAGTAACACTTGCAATAGTACCCTTGATTGCCCTTTCCGGTGGTCTTTATGCATATGTGACAATTGGACTTATTGCAAATGTTAAGAAAGCATATGTGACGGCTGGTGAAATCGCTGAAGAGGTGATAGGCAATGTTAGAACCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGATCATACAAAGCGGCTCTAATGGACACATATAGGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTTTGCAATTTGTCCTTTTTCTATCATGGGCTTTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGAGAGGCTTTCACTACCATGCTTAATGTGGTGATCTCTGGCTTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCCGAGCAAAGGCAGCAGCTTATCCTATTTTTGAGATGATTGAGAGGGACACAGTAAGCAACATTAGCTCCATAAGTGGTCAAAAATTAAGTCACATGGAGGGTCACATCCAATTTATGGATGTCTGTTTTAGTTACCCATCTCGTCCTGATGTAGTAATCTTCAACAATCTTTGTCTTGACATTCCTTCTGGAAAAATTTTAGCCCTTGTTGGAGGAAGTGGTTCTGGAAAAAGCACAGTGATATCATTAATTGAGCGCTTCTATGAACCACTTTCTGGACAAATATTATTAGATGGGCACAATATCAAGGAACTTGATCTCAAGTGGCTTAGACAACAAATTGGGCTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATTAGGGAGAACATTTTGTATGGAAAAGACGATGTCACTATTGATGAACTAAATCATGCTCTTAACCTTTCTGATGCTCAGTCCTTCATAAGAAATCTTCCCGATGGATTAGATACTCAGGTTGGTGAGAAAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTATTAGATGAAGCAACCAGTGCTTTGGATGCAGAGTCCGAGAAGAGTGTACAAGAGGCTCTTGATTGTGTCATGGTTGGTAGAACAACTGTGATAGTGGCACATAGACTTTCTACCATTAGAAATGCAGATATGATTGTTGTTGTTCAGGGAGGGAGTGTTGTAGAAATTGGAAACCATGAGGAGCTCATTTCCAACCCAAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGACTGACTCTTTTCAAGGCCACCCTTTTACGGATCCTTGCTTGGGGCAATCATCAAGGTACTTTGATCGTAGAATAATGCACTCAGGAGAATCATCCCATGCAACAAGCATTGGTGGTAGTTTTCGTTCAGATAAAGAATCTATTGGTGCTGATGAAGTAGCAAGTGTTGTGAAGTCAAGGCATGTCTCAACAAAAAGACTATATTCCATGATTGGTCCTGACAAGTTTTATGGGGTTTTTGGAACGTTTGGTGCATTTATTGCTGGATCCCTTATGCCACTTTTTGCTCTTGGAATATCTCATTCTCTGGTAGCATATTATATGGATTGGAATACAACACGTCATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGGGCAGCAGTTGTAGCCATCATTGCCTATGCCTTTGAACATCTTTCTTTTGGAATCATGGGCCAACGACTTACCCTTCGTGTGAGAGAAATTATGTTTTCTGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAGCAACACAAGTTCTGTTCTTTCAACACGTTTAGAGACTGATGCAACTTTATTACAAACTATAGTTGTTGATCGTTCTACAATTCTCTTACAAAATGTTGGTTTAGTTGTCACGTCATTTATTATTGCCTTTATTTTGAACTGGAGGATGACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATAAAAAAGCAAACATGTTGGCTGGGGAGGCAGTGAGTAATATACGTACTGTAGCTGCATTTTGTTCTGAAGATAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGAGCCTTCCAAGCATTCATTCAAACGAGGCCAAATTGCTGGCATATTATATGGAATTTCACAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCAGTCTTGTTGGAAAAGGAGCTTGCCAACTTTAAATCAATTATGAAGGCTTTTATGGTTTTAATTGTAACTGCACTGGCTATGGGGGAGACTTTGGCGTTGGCACCAGATCTTTTGAAAGGGAATCAAATGGTTGCATCAATTTTTGAAGTGATGGATAGAAAGACGGTAATAATGCATGATGTTGGAGAAGAGTTGATGACAGTGGAAGGAACAATTGAGCTAAAAAGAATCCATTTTAGCTACCCTTCAAGGCCAGGCGTGTTTGTTTTTATTGATCTCAATCTAACAGTGCGTGCAGGAAAGAGTATTGCCTTGGTGGGGCAAAGTGGTTCTGGTAAAAGCTCAATAATCTCCCTTATACTCAGATTTTATGACCCAACATCTGGGAAGGTGATGATTGATGGAAAAGACATCAGGAAAATAAATTTGAAATCGCTTAGGAAACATATTGGTCTTGTGCAACAAGAACCGGCTCTTTTTGCAACATCAATTTATGAAAATATTCTTTATGGGAAGGAAGGAGCCTCTGATTCAGAAGTAATTGAAGCAGCAAAACTTGCCAATGCTCATGGTTTTATTAGTGCTCTTCCTGAGGGCTACTCCACCAATGTAGGTGAGAGAGGAGTTCAACTATCTGGGGGCCAGAAACAAAGAGTAGCTATTGCCAGGGCTATTTTGAGAAACCCTGAAATCTTATTGCTAGATGAAGCCACCAGTGCCTTGGATATAGAGTCAGAGCGTATGGTGCAACAAGCTTTAGAAAAATTGATGCAAAACAGAACAACAGTTATGGTGGCAAATAGGCTATCAACAATAAGAAATGCATATCAAATATCAGTTTTACAAGGTGGGAAAATAATTGAGCAAGGCACCCATTCAAGTCTTATAGAGAACACAACAGGAGCTTACTTCAAACTAGTCAGCCTTCAACAACAACAACAACATATATAA 3243 0.3962 MHYISRFIAGFIIGFVRVWQITLVTLAIVPLIALSGGLYAYVTIGLIANVKKAYVTAGEIAEEVIGNVRTVQAFVGEERAVRSYKAALMDTYRNGRKAGLAKGLGLGSLQFVLFLSWALLAWFTSIVVHKNITNGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSNISSISGQKLSHMEGHIQFMDVCFSYPSRPDVVIFNNLCLDIPSGKILALVGGSGSGKSTVISLIERFYEPLSGQILLDGHNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDVTIDELNHALNLSDAQSFIRNLPDGLDTQVGEKGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDCVMVGRTTVIVAHRLSTIRNADMIVVVQGGSVVEIGNHEELISNPNSVYASLVQIQETDSFQGHPFTDPCLGQSSRYFDRRIMHSGESSHATSIGGSFRSDKESIGADEVASVVKSRHVSTKRLYSMIGPDKFYGVFGTFGAFIAGSLMPLFALGISHSLVAYYMDWNTTRHEVKKIAFLFCGAAVVAIIAYAFEHLSFGIMGQRLTLRVREIMFSAILKNEIGWFDDTSNTSSVLSTRLETDATLLQTIVVDRSTILLQNVGLVVTSFIIAFILNWRMTLVVLATYPLIISGHISEKLFMQGFGGNLSKAYKKANMLAGEAVSNIRTVAAFCSEDKVLDLYANELVEPSKHSFKRGQIAGILYGISQFFIFSSYGLALWYGSVLLEKELANFKSIMKAFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTVIMHDVGEELMTVEGTIELKRIHFSYPSRPGVFVFIDLNLTVRAGKSIALVGQSGSGKSSIISLILRFYDPTSGKVMIDGKDIRKINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHGFISALPEGYSTNVGERGVQLSGGQKQRVAIARAILRNPEILLLDEATSALDIESERMVQQALEKLMQNRTTVMVANRLSTIRNAYQISVLQGGKIIEQGTHSSLIENTTGAYFKLVSLQQQQQHI. 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07275 1080 SUPERFAMILY ABC transporter transmembrane region 503 817 IPR036640 GO:0005524|GO:0016020
Seca4g07275 1080 Gene3D - 826 1075 IPR027417 -
Seca4g07275 1080 Gene3D - 189 438 IPR027417 -
Seca4g07275 1080 PANTHER ABC TRANSPORTER B FAMILY 2 439 IPR039421 -
Seca4g07275 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 1074 IPR027417 -
Seca4g07275 1080 CDD ABC_MTABC3_MDL1_MDL2 199 437 - -
Seca4g07275 1080 ProSitePatterns ABC transporters family signature. 975 989 IPR017871 GO:0005524|GO:0016887
Seca4g07275 1080 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 199 435 IPR003439 GO:0005524
Seca4g07275 1080 Pfam ABC transporter 218 366 IPR003439 GO:0005524
Seca4g07275 1080 Pfam ABC transporter transmembrane region 518 789 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07275 1080 Pfam ABC transporter transmembrane region 2 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07275 1080 SUPERFAMILY ABC transporter transmembrane region 4 177 IPR036640 GO:0005524|GO:0016020
Seca4g07275 1080 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 517 803 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07275 1080 SMART AAA_5 863 1055 IPR003593 GO:0016887
Seca4g07275 1080 SMART AAA_5 226 412 IPR003593 GO:0016887
Seca4g07275 1080 Gene3D ABC transporter type 1, transmembrane domain 473 680 IPR036640 GO:0005524|GO:0016020
Seca4g07275 1080 Gene3D ABC transporter type 1, transmembrane domain 750 1078 IPR036640 GO:0005524|GO:0016020
Seca4g07275 1080 CDD ABC_MTABC3_MDL1_MDL2 836 1074 - -
Seca4g07275 1080 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Seca4g07275 1080 CDD ABC_6TM_Pgp_ABCB1_D2_like 506 821 - -
Seca4g07275 1080 Gene3D ABC transporter type 1, transmembrane domain 2 439 IPR036640 GO:0005524|GO:0016020
Seca4g07275 1080 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 172 - -
Seca4g07275 1080 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 836 1072 IPR003439 GO:0005524
Seca4g07275 1080 FunFam ABC transporter B family member 1 189 438 - -
Seca4g07275 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 437 IPR027417 -
Seca4g07275 1080 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g07275 1080 FunFam ABC transporter B family member 4 826 1079 - -
Seca4g07275 1080 Pfam ABC transporter 856 1003 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07275 Seca-Chr4 162945464 162951002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07275 1 1075 Calmodulin-binding Proteins AT2G36910 50.543 0.0 1062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07275 K05658 - gmx:100809752 1736.08