Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07270 ATGGGTTCTAATTATGAAGAGGAACAGCTTCCAAAATGTTCACCTCATGAAGCAACAGAGGATGATGCATGCCTCTCTGCCATGCAGCTCTGTTTTGGTCCAATGGTCTATTCGGCAGCATTGAATGCAGCCATTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAACACCACCTGGTGTGTCTGCCTCTGAGATTTCTTCACAACTTCCAACACAGCACACAGAATTGCCACGCAGGCTTGATCGTATGCTCTGTTTGCTTGCAAGCCACTCTCTTCTTAATTGTTCAACGCGCACAAATGAAAGCGGTGAGATTGAAAGACTTTATGAACTATCACCGACTGGTAAATACTTTATCAATGATGACAAGAGTGGTTCTGTTGTTTGTTTACATGTTAGCCTTAATTTTAAGGAGGTGCTGTTGGATTGTGATAATGGGCTATACATGAAAGTTCATGGAATGCCTGTTTATCAAGGGATACAGTCTGATCCGGCTTGGAATCATGTTTTTAACAAAGCAATGGCCAATATTTGCACAATTGAGATGAACAAAATATTTGAAAAGTACAGTGGATTTGAAGGAATATCATTGCTGGTTGATGTGGGAGGTGGAATTGGGCAAAGTTTGAATATGGTAATCTCCAAATATCCTTCAATGAAGGGTATTAATTTTGATCTGCCCCAAGTAATACAAAATGCTCCACCTTATCTAGGGATTGAGCATGTTGAAGGAGACATGTTTGAAAGTGTTCCAGGAGGTGATGCCATAATATTGAAGGCCGTATTGCACAATTGGTCTGATGAAAACTGTTTAAAAGTCCTAAGTAATTGCTACAAAGCTTTGCCACAAAAGGGGAAGGTCATAGTCATTGATTTCATCATGCCTCAAGTAATTCAGTCTACAAAAGCAGACAAAATGGTTACTAGCTTTGACAATCTCATGTTTCTAGATGGTGGGATCGAAAGAACTGAAAAAGAATTTCAGAATTTATGCAAGAGCTCAAGCTTCTCTGGTTTCCAAGTTATTTGTCGTGCCTTTTCTGCTTTAGAACTAACAATGGGTTCTAATTATGAAGAGGTACAGCCTCATGAAGCAACAGAGGATGATGCATGCCTCTCTGCAATGCAGCTCTGTTTTGGTCCAATGGTCTATTCGGCAGCATTGAATGCTGCCATTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAACACCGCCTGGTGTGTCTGCCTCTGAGATTTCATCACAACTTCCAACACAGCACAAAGAATTGCCACGCAGGCTTGATCGTATGCTCTGTTTGCTTGCAAGCCACTCCCTTCTTAATTGTTCTAAGGGCACAAATGAAGATGGTGAGATTGAAAGACTTTATGAGCTATCACCGACTGGTAAATACTTTGTCAGTGGTCAAAACAGTGGCTCTGTTGTTGTGTTTCATGTCAGCCTTAATTTTAAGGAGGTACTGTTGGATTGTGATAATGGGCTATACATGAAAGTTCATGGAATGCCTGTTTATCAAGGGATACAGTCTGATCCGGCTTGGAATCATGTTTTTAACAAAGCAATGGCCAATATTTGCACAATTGAGATGACCAAAATACTTGAAAAGTACAGGGGGTTTGAAGCAATGTCATTGCTAGTTGATGTGGGAGGTGGAGTTGGGCAAAGTTTGAATATGATAATCTCCAAATATCCTTCAATGAAGGGTATTAATTTTGATCTGCCCCAAGTAATACAAAATGCCCCAGCTTATCCAGGGATTGAGCATGTTGAAGGAGACATGTTTGAAAGTGTTCCAGGAGGTGATGCTATAGTATTGAAGGCCGTATTGCACAATTGGTGTGATGAGAAGTGTTTAAAAGTCTTAAGCAATTGCTACAAAGCTTTGCCACAAAAGGGGAAGGTCATAGTCATTGATTTCATCATGCCTCAAGTAATTCAGTCTACTAAAGCAGATAAGATGGTTACTAGCTTTGACAATCTCATGTTTCTAGATGGTGGCTTTGAAAGAACAGAAAAGGAATTTGAGAATTTATGCAAACGCTCAGGCTTCTCTGGTTTCCAAGTTGTCTTTCGTGCCTTCTCTGCTCTAGGAGTGATGGAATTTTATAAATAA 2118 0.4032 MGSNYEEEQLPKCSPHEATEDDACLSAMQLCFGPMVYSAALNAAIELNLFEIIAKATPPGVSASEISSQLPTQHTELPRRLDRMLCLLASHSLLNCSTRTNESGEIERLYELSPTGKYFINDDKSGSVVCLHVSLNFKEVLLDCDNGLYMKVHGMPVYQGIQSDPAWNHVFNKAMANICTIEMNKIFEKYSGFEGISLLVDVGGGIGQSLNMVISKYPSMKGINFDLPQVIQNAPPYLGIEHVEGDMFESVPGGDAIILKAVLHNWSDENCLKVLSNCYKALPQKGKVIVIDFIMPQVIQSTKADKMVTSFDNLMFLDGGIERTEKEFQNLCKSSSFSGFQVICRAFSALELTMGSNYEEVQPHEATEDDACLSAMQLCFGPMVYSAALNAAIELNLFEIIAKATPPGVSASEISSQLPTQHKELPRRLDRMLCLLASHSLLNCSKGTNEDGEIERLYELSPTGKYFVSGQNSGSVVVFHVSLNFKEVLLDCDNGLYMKVHGMPVYQGIQSDPAWNHVFNKAMANICTIEMTKILEKYRGFEAMSLLVDVGGGVGQSLNMIISKYPSMKGINFDLPQVIQNAPAYPGIEHVEGDMFESVPGGDAIVLKAVLHNWCDEKCLKVLSNCYKALPQKGKVIVIDFIMPQVIQSTKADKMVTSFDNLMFLDGGFERTEKEFENLCKRSGFSGFQVVFRAFSALGVMEFYK. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07270 705 PANTHER O-METHYLTRANSFERASE 385 695 IPR016461 GO:0008168
Seca4g07270 705 Gene3D - 384 534 IPR036388 -
Seca4g07270 705 SUPERFAMILY "Winged helix" DNA-binding domain 368 470 IPR036390 -
Seca4g07270 705 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 377 705 IPR016461 GO:0008168
Seca4g07270 705 FunFam Caffeic acid 3-O-methyltransferase 3 119 - -
Seca4g07270 705 Gene3D Vaccinia Virus protein VP39 516 693 IPR029063 -
Seca4g07270 705 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 356 IPR016461 GO:0008168
Seca4g07270 705 Pfam O-methyltransferase domain 143 338 IPR001077 GO:0008171
Seca4g07270 705 Pfam O-methyltransferase domain 491 686 IPR001077 GO:0008171
Seca4g07270 705 Gene3D - 36 186 IPR036388 -
Seca4g07270 705 FunFam Caffeic acid 3-O-methyltransferase 355 467 - -
Seca4g07270 705 Pfam Dimerisation domain 40 89 IPR012967 GO:0046983
Seca4g07270 705 Pfam Dimerisation domain 388 437 IPR012967 GO:0046983
Seca4g07270 705 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 146 344 IPR029063 -
Seca4g07270 705 Gene3D Vaccinia Virus protein VP39 168 346 IPR029063 -
Seca4g07270 705 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 493 697 IPR029063 -
Seca4g07270 705 SUPERFAMILY "Winged helix" DNA-binding domain 20 122 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07270 Seca-Chr4 162757381 162772835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07270 354 705 Monolignol Biosynthesis Gene Families AT5G54160 46.575 1.07e-99 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07270 - - adu:107471788 580.482