Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07234 ATGACCAAGAACAGCTGGTTTAGTATGGTGATGAGGCTCTTTACATGGGACACACATGCCACACAAGAGAAGTATGATTATGTTGCTCATGAGACAAAAACTTGTTTTCAGAAGGAGAAAAGAAGGAAATGGTTATTTGGGAGGCTAAGGACCAAGAGATTGCCTTCAATTGAAGCTCCATCACCATCAAAAGAAACAATATTAAGAGAAGCTGAGGAAGAACAAACTATTGCCTCAGCTGCTGCTGCTGAAGCTGCTATTACTGCTGCTCAGGTTGCTGTTCAGGTTGTTAGGCTCCAATCTGCTCATCATTGTACAGAAAACTCAGAAGAATTTCAACCTGTTAAATCTAGGCATGATGCTCCTCAATCCACATACCAATGGCAGAGGAAGATTCAAGAATCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTAGCAAGGAAAGCTTTGAGGGCATTGAAGGGAATAGTGAAGCTTCAAGCCATCATTCGTGGCAGAGCTGTAAGACGCCAAGCTATGAGTACTCTGAAATGCTTGCAATCCATTGTAAATATCCAGTCACAGGTCTTTGCAAGGAGGCTCCAAATGGTTGAAGGAAGATGTGATTGTGGTGAAAATGAAGATATGCAAGGTTCAAGGGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGGATGATAGCATTTTATTGAAGAAAGAGGTAGATGCCTCTTGCATAAGCAAGAAAGAAGCTGTTGTTAAAAGAGAAAGAGTAAAAGAATACTCATATAACCATAGAAGGTCAGCTGAATCAGAAAGAAATAAAATAAATGGAAGATGGAGGTATTGGATGGAGCAATGGGTAGATACCCAACTTTCTAAGAGTAAAGAACTTGAAGATTTGGACTCAGTTTTCAGCTCACATTCTAGAGGTGGGGATGAATGTGGAAGAAGGCAAGTTAAGCTTAGACATATTCCAAGACAAAATCAGGTTGAAGGATTAGATTCTCCAATACTTGCTTCAAGGAACTCATTTCCCAACAGGAGCCAGAATTCAGAGGGAGAAGATCATTCAATTCCAAGCTCTCCTGCAATTCCCACATACATGGCTGCAACAAAATCAGCACAAGCAAAAGTAAGATCAGCAAGCTCCCCAAGAGTTAGGACAGGAGGGAATTTGGACATGAACTCTGATTGCTATTCACCATGCAAGAGAAAGCTTTCTATCATAGCTTCCATTAATAATGAAGTTCTCAGTAATGGTACTAGGATGGGGAAGCTCAGTAATAATCAGCAAAGATCTCCTAGCTTAAAAGGCCTCTCAAAGCCTTTAAAATCAAGCCAGACAATGAAGGATCTCATCATTAATTCGGATTTCTCAGTGCCGAATTGA 1389 0.4053 MTKNSWFSMVMRLFTWDTHATQEKYDYVAHETKTCFQKEKRRKWLFGRLRTKRLPSIEAPSPSKETILREAEEEQTIASAAAAEAAITAAQVAVQVVRLQSAHHCTENSEEFQPVKSRHDAPQSTYQWQRKIQESSAIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVNIQSQVFARRLQMVEGRCDCGENEDMQGSRDKIIRMDSNSERRWDDSILLKKEVDASCISKKEAVVKRERVKEYSYNHRRSAESERNKINGRWRYWMEQWVDTQLSKSKELEDLDSVFSSHSRGGDECGRRQVKLRHIPRQNQVEGLDSPILASRNSFPNRSQNSEGEDHSIPSSPAIPTYMAATKSAQAKVRSASSPRVRTGGNLDMNSDCYSPCKRKLSIIASINNEVLSNGTRMGKLSNNQQRSPSLKGLSKPLKSSQTMKDLIINSDFSVPN. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07234 462 Gene3D - 133 183 - -
Seca4g07234 462 MobiDBLite consensus disorder prediction 421 447 - -
Seca4g07234 462 Pfam IQ calmodulin-binding motif 135 154 IPR000048 GO:0005515
Seca4g07234 462 Pfam Protein of unknown function (DUF4005) 348 432 IPR025064 -
Seca4g07234 462 PANTHER IQ-DOMAIN 5-RELATED 1 410 - -
Seca4g07234 462 MobiDBLite consensus disorder prediction 323 364 - -
Seca4g07234 462 ProSiteProfiles IQ motif profile. 157 184 IPR000048 GO:0005515
Seca4g07234 462 SMART iq_5 132 154 IPR000048 GO:0005515
Seca4g07234 462 FunFam IQ-domain 11 132 183 - -
Seca4g07234 462 ProSiteProfiles IQ motif profile. 133 161 IPR000048 GO:0005515
Seca4g07234 462 MobiDBLite consensus disorder prediction 333 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07234 Seca-Chr4 162069475 162072274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07234 37 462 IQD Protein Family AT5G13460 44.796 1.78e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07234 - - gmx:100794802 612.068