Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07209 ATGGATCCGCAACTGGAGCTGTCCGATCAGGTCAAGTACTGCACCGAGCCGCTCACCTTTTTGAAGAACAAGCTCCGCACTCCTCACACCATCTCCCAAGAGTTCGCTCACTTGCAGGCGAACAGGATAACACCGAGTGAGATGGGGAGAAGATGCAACGTAGCTCTTAATGTTGTCAATGCGAGCAAAAATCGATATAGAGATGTGATACCATTTGACAAGAACAGGGTTGTTCTCAAATCAACACTGGGGTATATCAATGCAAGCTTTATCTCCCAAATCCTTCCAAGGGACATAGAGATTATTATCTTCAATTGTGATAAATTGAAGAATGAGGAAATTGAAGATGCACTTCACCTGTTTGCTAAATTGCCCATGAGGAATGCCATTTTCTGGACTACATTAATTGGGCCTGACCACCTTGCAGCATTGGCTCCTTTGTCAATTGGTCGTACCAGACTGGAGAGTGCTATTGTTGGAGCCCTTTTGGGTTGTGGCCATGATGCTGGTCAAGTTATCTTTGGCTTAATATTTTTGCTCCTAAAAGATCGGCTTCATATTGAAATTATCCGAACTTGGGGTACTAGAGTGGTGGGTCTTACCTTGCTTGTAATTGGTGCAATGGGAATTAAAGAAGCTTCAGAAGTGCCTACACCATGTGTTGCCTTAGAAGATGGTGAATGTGATGTCAGTGTCTACGAAGCGCCTGATAATCCTGTAGTTGGAAAGAAGAAGATTGGTTTTGCTACTTTTACCACAAACAGATTTCTAACACATTGGTTTTCAAGTTGA 792 0.4318 MDPQLELSDQVKYCTEPLTFLKNKLRTPHTISQEFAHLQANRITPSEMGRRCNVALNVVNASKNRYRDVIPFDKNRVVLKSTLGYINASFISQILPRDIEIIIFNCDKLKNEEIEDALHLFAKLPMRNAIFWTTLIGPDHLAALAPLSIGRTRLESAIVGALLGCGHDAGQVIFGLIFLLLKDRLHIEIIRTWGTRVVGLTLLVIGAMGIKEASEVPTPCVALEDGECDVSVYEAPDNPVVGKKKIGFATFTTNRFLTHWFSS. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07209 263 Gene3D Protein tyrosine phosphatase superfamily 6 119 IPR029021 -
Seca4g07209 263 PANTHER UNNAMED PRODUCT 134 253 - -
Seca4g07209 263 Pfam Protein-tyrosine phosphatase 60 94 IPR000242 GO:0004725|GO:0006470
Seca4g07209 263 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 94 IPR029021 -
Seca4g07209 263 ProSiteProfiles PTP type protein phosphatase domain profile. 31 132 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07209 Seca-Chr4 160468932 160469744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07209 9 91 Protein tyrosine phosphatase (PTP) family AT1G71860 48.864 2.01e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07209 - - fve:101293334 221.861