Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07193 ATGGAAGAAATAGAGGTCAGTAACAGTCAAGTAACTCTTTCTGGTCTTCTGAATTTCGTTGATGGGTTATGGTCTGCTTGTGCTGGAGAAAGATTAATAGTTTTCACAACAAATTATTTGGAGAAACTGGATCCAGCATTGATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAATACGACACGAGAATCTTCTTAGTCTACGTGACTATTGTGCTGAAGGTCAGGAACGGTTAATTGTATATGACTATATGCCGAATTTGAGCCTGCTCTCTCATCTTCATGGACAGTATTCAGCAGAATCCCTTCTTGATTGGAATCGACGTATATTGCAATCGGATCTGCTGAGGGAATTGTGGAAGCTGAAGTACATGGATATGAGTTATTCCCGGAATCTAAAGCGATTACCTGATCTTTCTGTTGTTCCCAATCTTGAAACACTTGATCTTAGACATTGTTCACTCCTTACAGAGGGTGTATGGGAATCCATGGAAGAGTGCCTCAAACTTGGCCTCATGAGAGCTATTGGAGACAGCAACTTCTTTGTCAAGAAGCTTCAGAATCTGCTTTCTGTTGTGTTTTTGGGTTAG 633 0.4044 MEEIEVSNSQVTLSGLLNFVDGLWSACAGERLIVFTTNYLEKLDPALIAVKRLKVWSNKADMEFAVEVEILARIRHENLLSLRDYCAEGQERLIVYDYMPNLSLLSHLHGQYSAESLLDWNRRILQSDLLRELWKLKYMDMSYSRNLKRLPDLSVVPNLETLDLRHCSLLTEGVWESMEECLKLGLMRAIGDSNFFVKKLQNLLSVVFLG. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07193 210 PANTHER OS01G0253100 PROTEIN 35 124 - -
Seca4g07193 210 SUPERFAMILY Protein kinase-like (PK-like) 41 123 IPR011009 -
Seca4g07193 210 ProSiteProfiles Protein kinase domain profile. 17 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07193 210 SUPERFAMILY L domain-like 97 184 - -
Seca4g07193 210 Gene3D - 108 208 IPR036812 -
Seca4g07193 210 Gene3D Phosphorylase Kinase; domain 1 34 99 - -
Seca4g07193 210 Pfam Protein tyrosine and serine/threonine kinase 44 120 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07193 Seca-Chr4 160005936 160007274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07193 35 124 Trihelix Transcription Factor Family AT1G70460 47.253 2.67e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Seca4g07193 PK_Tyr_Ser-Thr 3.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07193 - - gmx:100819540 150.984