Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07183 ATGGCCGAAGATCGACCCCCGAAACGCGTCAAAATCACCAGGGGGGAAGATGATTACATGCCTGGTAACATTCTTGAGATCGAGCTTTGTAATTTCATGACCTTTGATTACTTAAAATGTAAACCTGGTCCTCGATTGAATCTTGTAATTGGGCCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCCCTTGGCCTCTGTGGGGAGCCCCAGTTGCTTGGGCGAGCCACAAGTATTGGGGCATATGTGAAGCGGGGAGAAGAGTCTGGCCACATTAAGATTACCTTGAGAGGGGATCAAAAAGAGGAATACATTACCATTATGCGTAAAATAAATACTAACAATAAGTCTGAATGGTTGTTCAATGGAAATGTAGTGCCTAAAAAGGATATCGCTGAAACCATTCAAAGGTTTAATATCCAAGTCAATAATTTGACTCAATTTTTGCCACAAGACAGGGTCTGTGAGTTTGCAAAGTTAAGTCCTGTGCAGCTTTTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAACAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGCATATTGAGCTGTCTCTTGAGAAAAATGAAGGAACTTTAAATCAATTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAATCAATGAAAAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGCTGAATATCGAGAAGCTAAGGAGCGTGAGAATGAGGCAGCAAAGGCATTGAAAGAAGCTGCGAAGTTATTAAATGATCTTAAAGAACCTATTAAGAAGCAAAAAGAGGAGAAGGCTGCATTAGATGCAAAATGTAAAAAGGTAAGCAGCCGCGTAAATGAGAATGCCAAGAAGCGAATGGATCTTTTGCAGAAAGAAAACCAATTGGATGTGGAATTACAAGGAAGGTACAAAGATATGGAAGATTTGAGGAGGGAGGAAGAAACCCGGCAACAACGACTTATAAAAGCTAAGGAGGATCTTGCTGCTGCTGAACATGAACTTGAGAGTCTACACTCTTGTGAAGCTGCCATTGATGAGATTGTAAGTGTCCTTATAATCACTGGTTATATGATATATATCTTCAATTAA 1164 0.4055 MAEDRPPKRVKITRGEDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGHIKITLRGDQKEEYITIMRKINTNNKSEWLFNGNVVPKKDIAETIQRFNIQVNNLTQFLPQDRVCEFAKLSPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHIELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLRYDMKQAEYREAKERENEAAKALKEAAKLLNDLKEPIKKQKEEKAALDAKCKKVSSRVNENAKKRMDLLQKENQLDVELQGRYKDMEDLRREEETRQQRLIKAKEDLAAAEHELESLHSCEAAIDEIVSVLIITGYMIYIFN. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07183 387 Coils Coil 247 317 - -
Seca4g07183 387 Coils Coil 194 235 - -
Seca4g07183 387 Gene3D - 23 242 IPR027417 -
Seca4g07183 387 Pfam RecF/RecN/SMC N terminal domain 25 147 IPR003395 -
Seca4g07183 387 Coils Coil 331 351 - -
Seca4g07183 387 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 371 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Seca4g07183 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07183 Seca-Chr4 159827807 159837884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07183 4 362 Structural Maintenance of Chromosomes family AT5G15920 68.245 4.73e-164 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07183 K22803 - gmx:100778678 603.208